PEcAn.DB - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
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pecandatabasebayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplants
12.15 score 253 stars 26 dependents 141 scriptsPEcAn.data.atmosphere - PEcAn Functions Used for Managing Climate Driver Data
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The PECAn.data.atmosphere package converts climate driver data into a standard format for models integrated into PEcAn. As a standalone package, it provides an interface to access diverse climate data sets.
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climate-datadata-standardizationbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
11.93 score 253 stars 14 dependents 79 scriptsPEcAn.benchmark - PEcAn Functions Used for Benchmarking
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. The PEcAn.benchmark package provides utilities for comparing models and data, including a suite of statistical metrics and plots.
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model-evaluationmodel-data-comparisonpecanbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplants
11.43 score 253 stars 3 dependents 468 scriptsPEcAn.utils - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
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pecanbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplants
11.29 score 253 stars 36 dependents 282 scriptsPEcAn.MA - PEcAn Functions Used for Meta-Analysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. The PEcAn.MA package contains the functions used in the Bayesian meta-analysis of trait data.
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parameter-estimationmodel-calibrationbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp
10.43 score 253 stars 7 dependents 9 scriptsPEcAn.settings - PEcAn Settings Package
Contains functions to read PEcAn settings files.
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pecanworkflow-configurationbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplants
10.38 score 253 stars 13 dependents 97 scriptsPEcAn.assim.batch - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Last updated
data-assimilationparameter-estimationbayesian-inferenceecological-modelingmodel-calibrationbayesiancyberinfrastructuredata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp
10.25 score 253 stars 2 dependents 23 scriptsPEcAn.logger - Logger Functions for 'PEcAn'
Convenience functions for logging outputs from 'PEcAn', the Predictive Ecosystem Analyzer (LeBauer et al. 2017) <doi:10.1890/12-0137.1>. Enables the user to set what level of messages are printed, as well as whether these messages are written to the console, a file, or both. It also allows control over whether severe errors should stop execution of the 'PEcAn' workflow; this allows strictness when debugging and lenience when running large batches of simulations that should not be terminated by errors in individual models. It is loosely based on the 'log4j' package.
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pecanloggererror-handlinglogging-levelsmessage-filteringbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplants
10.22 score 253 stars 41 dependents 21 scriptsPEcAn.priors - PEcAn Functions Used to Estimate Priors from Data
Functions to estimate priors from data.
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bayesian-inferencestatistical-validationbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp
10.14 score 253 stars 6 dependents 12 scriptsPEcAnRTM - PEcAn Functions Used for Radiative Transfer Modeling
Functions for performing forward runs and inversions of radiative transfer models (RTMs). Inversions can be performed using maximum likelihood, or more complex hierarchical Bayesian methods. Underlying numerical analyses are optimized for speed using Fortran code.
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radiative-transfer-modelingbayesian-inversionpecanbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplantsglibcjagscpp
9.91 score 253 stars 126 scriptsPEcAn.remote - PEcAn Model Execution Utilities
This package contains utilities for communicating with and executing code on local and remote hosts. In particular, it has PEcAn-specific utilities for starting ecosystem model runs.
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pecandistributed-computingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplants
9.90 score 253 stars 32 dependents 13 scriptsPEcAn.visualization - PEcAn visualization functions
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This module is used to create more complex visualizations from the data generated by PEcAn code, specifically the models.
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pecandata-visualizationstatistical-graphicsggplot2bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplants
9.77 score 253 stars 92 scriptsPEcAn.data.land - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
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soil-datavegetation-dataland-coverbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.74 score 253 stars 10 dependents 29 scriptsPEcAn.uncertainty - PEcAn Functions Used for Propagating and Partitioning Uncertainties in Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
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ecological-forecastingsensitivity-analysispecanuncertainty-propagationbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplantsjagscpp
9.53 score 253 stars 5 dependents 35 scriptsPEcAn.all - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Last updated
pecanmodel-validationmodel-evaluationmodel-comparisonreproducibilitybayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplantsjagscpp
9.45 score 253 stars 441 scriptsPEcAn.allometry - PEcAn Allometry Functions
Synthesize allometric equations or fit allometries to data.
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allometrybiomassplant-traitsbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.37 score 253 stars 37 scriptsPEcAn.qaqc - QAQC
PEcAn integration and model skill testing
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pecanquality-controldata-cleaningbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplants
9.28 score 253 stars 5 scriptsPEcAn.BIOCRO - PEcAn Package for Integration of the BioCro Model
This module provides functions to link BioCro to PEcAn.
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bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.20 score 253 stars 25 scriptsPEcAn.MAAT - PEcAn Package for Integration of the MAAT Model
This module provides functions to wrap the MAAT model into the PEcAn workflows.
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maatecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.15 score 253 stars 11 scriptsPEcAn.photosynthesis - PEcAn functions used for leaf-level photosynthesis calculations
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. The PEcAn.photosynthesis package contains functions used in the Hierarchical Bayesian calibration of the Farquhar et al 1980 model.
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photosynthesispecanbayesian calibrationjagsbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplantscpp
9.08 score 253 stars 19 scriptsPEcAn.workflow - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides workhorse functions that can be used to run the major steps of a PEcAn analysis.
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pecandata-assimilationecosystem-modelingreproducibilitybayesiancyberinfrastructuredata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplantsjagscpp
9.06 score 253 stars 4 dependents 15 scriptsPEcAn.emulator - Gausian Process Emulator
Implementation of a Gaussian Process model (both likelihood and bayesian approaches) for kriging and model emulation. Includes functions for sampling design and prediction.
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emulatorgaussian-processbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.06 score 253 stars 6 dependents 2 scriptsPEcAn.ED2 - PEcAn Package for Integration of ED2 Model
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides functions to link the Ecosystem Demography Model, version 2, to PEcAn.
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ed2ecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.05 score 253 stars 177 scriptsPEcAn.data.remote - PEcAn Functions Used for Extracting Remote Sensing Data
PEcAn module for processing remote data. Python module requirements: requests, json, re, ast, panads, sys. If any of these modules are missing, install using pip install <module name>.
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remote-sensingmodislandsatearth-observationbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.98 score 253 stars 5 dependents 7 scriptsPEcAn.SIPNET - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
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sipnetecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.64 score 253 stars 69 scriptsPEcAn.LINKAGES - PEcAn Package for Integration of the LINKAGES Model
This module provides functions to link the (LINKAGES) to PEcAn.
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linkagesecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.60 score 253 stars 63 scriptsPEcAnAssimSequential - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Last updated
state-data-assimilationensemble-kalman-filterparticle-filterecological-forecastingforecast-verificationbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp
8.55 score 253 stars 56 scriptsPEcAn.data.mining - PEcAn Functions Used for Exploring Model Residuals and Structures
(Temporary description) PEcAn functions used for exploring model residuals and structures.
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bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 stars 1 scriptsPEcAn.dvmdostem - PEcAn Package for Integration of the Dvmdostem Model
This module provides functions to link the dvmdostem model to PEcAn.
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dvmdostemecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 stars 3 scriptsPEcAn.JULES - PEcAn Package for Integration of the JULES Model
This module provides functions to link the (JULES) to PEcAn.
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julesecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 starsPEcAn.CLM45 - PEcAn Package for Integration of CLM4.5 Model
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides functions to link the Community Land Model, version 4.5, to PEcAn.
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clm45ecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 stars 1 scriptsPEcAn.STICS - PEcAn Package for Integration of the STICS Model
This module provides functions to link the STICS to PEcAn.
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sticsecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 starsPEcAn.SIBCASA - PEcAn Package for Integration of the SiBCASA Model
This module provides functions to link (SiBCASA) to PEcAn. It is a work in progress and is not yet fully functional.
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sibcasaecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 starsPEcAn.RothC - PEcAn Package for Integration of the RothC Model
This module provides functions to link the Rothamstead soil carbon model "RothC" to PEcAn. Uses RothC >= 2.0, available on GitHub <https://github.com/Rothamsted-Models/RothC_Code> as well as directly from the RothC team <https://www.rothamsted.ac.uk/rothamsted-carbon-model-rothc>.
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bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 starsPEcAn.DALEC - PEcAn Package for Integration of the DALEC Model
This module provides functions to link DALEC to PEcAn.
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dalececosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 stars 7 scriptsPEcAn.MAESPA - PEcAn Functions Used for Ecological Forecasts and Reanalysis using MAESPA
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.This package allows for MAESPA to be run through the PEcAN workflow.
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maespaecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 stars 2 scriptsPEcAn.LDNDC - PEcAn package for integration of the LDNDC model
This module provides functions to link the (LDNDC) to PEcAn.
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ldndcecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 starsPEcAn.PEPRMT - PEcAn Package for Integration of the PEPRMT Model
This module provides functions to link PEPRMT to PEcAn.
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bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 stars 5 scriptsPEcAn.GDAY - PEcAn Package for Integration of the GDAY Model
This module provides functions to link the GDAY model to PEcAn.
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gdayecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 stars 1 scriptsPEcAn.PRELES - PEcAn Package for Integration of the PRELES Model
This module provides functions to run the PREdict Light use efficiency Evapotranspiration and Soil moisture (PRELES) model on the PEcAn project. The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool designed to simplify the management of model parameterization,execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
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prelesecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 stars 3 scriptsPEcAn.CABLE - PEcAn package for integration of the CABLE model
This module provides functions to link the (CABLE) to PEcAn.
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cableecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 starsPEcAn.LPJGUESS - PEcAn Package for Integration of the LPJ-GUESS Model
This module provides functions to link LPJ-GUESS to PEcAn.
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lpj-guessecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantscpp
7.80 score 253 stars 1 scriptsPEcAn.BASGRA - PEcAn Package for Integration of the BASGRA Model
This module provides functions to link the BASGRA model to PEcAn.
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bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsfortranglibc
7.80 score 253 stars 1 scriptsPEcAn.FATES - PEcAn Package for Integration of FATES Model
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides functions to link the FATES model to PEcAn.
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fatesecosystem-modelingbayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.80 score 253 stars 6 scriptsBioCro - BioCro Crop and Agroecosystem Simulator
Simulate C4 crops and coppice trees.
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5.91 score 52 stars 185 scripts 401 downloads