PEcAn.DB - PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

11.83 score 205 stars 27 dependents 127 scripts

PEcAn.data.atmosphere - PEcAn Functions Used for Managing Climate Driver Data

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The PECAn.data.atmosphere package converts climate driver data into a standard format for models integrated into PEcAn. As a standalone package, it provides an interface to access diverse climate data sets.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

11.54 score 205 stars 14 dependents 64 scripts

PEcAn.visualization - PEcAn visualization functions

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This module is used to create more complex visualizations from the data generated by PEcAn code, specifically the models.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

10.90 score 205 stars 11 dependents 74 scripts

PEcAn.utils - PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

10.87 score 205 stars 35 dependents 218 scripts

PEcAn.benchmark - PEcAn Functions Used for Benchmarking

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

10.65 score 205 stars 11 dependents 416 scripts

BayesianTools - General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics

General-purpose MCMC and SMC samplers, as well as plots and diagnostic functions for Bayesian statistics, with a particular focus on calibrating complex system models. Implemented samplers include various Metropolis MCMC variants (including adaptive and/or delayed rejection MH), the T-walk, two differential evolution MCMCs, two DREAM MCMCs, and a sequential Monte Carlo (SMC) particle filter.

Last updated 11 months ago

bayesecological-modelsmcmcoptimizationsmcsystems-biologycpp

10.17 score 120 stars 5 dependents 586 scripts 790 downloads

PEcAn.settings - PEcAn Settings package

Contains functions to read PEcAn settings files.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

9.95 score 205 stars 17 dependents 54 scripts

PEcAn.assim.batch - PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

9.89 score 205 stars 2 dependents 20 scripts

PEcAn.priors - PEcAn Functions Used to Estimate Priors from Data

Functions to estimate priors from data.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

9.88 score 205 stars 6 dependents 13 scripts

PEcAn.MA - PEcAn Functions Used for Meta-Analysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. The PEcAn.MA package contains the functions used in the Bayesian meta-analysis of trait data.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

9.84 score 205 stars 7 dependents 7 scripts

PEcAn.ED2 - PEcAn Package for Integration of ED2 Model

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides functions to link the Ecosystem Demography Model, version 2, to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

9.67 score 205 stars 145 scripts

PEcAnRTM - PEcAn Functions Used for Radiative Transfer Modeling

Functions for performing forward runs and inversions of radiative transfer models (RTMs). Inversions can be performed using maximum likelihood, or more complex hierarchical Bayesian methods. Underlying numerical analyses are optimized for speed using Fortran code.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsfortranjagscpp

9.63 score 205 stars 132 scripts

PEcAn.remote - PEcAn Model Execution Utilities

This package contains utilities for communicating with and executing code on local and remote hosts. In particular, it has PEcAn-specific utilities for starting ecosystem model runs.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

9.61 score 205 stars 32 dependents 13 scripts

PEcAn.logger - Logger Functions for 'PEcAn'

Convenience functions for logging outputs from 'PEcAn', the Predictive Ecosystem Analyzer (LeBauer et al. 2017) <doi:10.1890/12-0137.1>. Enables the user to set what level of messages are printed, as well as whether these messages are written to the console, a file, or both. It also allows control over whether severe errors should stop execution of the 'PEcAn' workflow; this allows strictness when debugging and lenience when running large batches of simulations that should not be terminated by errors in individual models. It is loosely based on the 'log4j' package.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

9.59 score 205 stars 40 dependents 7 scripts

PEcAn.data.land - PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Last updated 2 months ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

9.30 score 202 stars 10 dependents 19 scripts

PEcAn.allometry - PEcAn Allometry Functions

Synthesize allometric equations or fit allometries to data.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

9.03 score 205 stars 33 scripts

PEcAn.qaqc - QAQC

PEcAn integration and model skill testing

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

8.99 score 205 stars 5 scripts

PEcAn.all - PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

8.94 score 205 stars 266 scripts

PEcAn.MAAT - PEcAn Package for Integration of the MAAT Model

This module provides functions to wrap the MAAT model into the PEcAn workflows.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

8.89 score 205 stars 12 scripts

PEcAn.BIOCRO - PEcAn Package for Integration of the BioCro Model

This module provides functions to link BioCro to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

8.88 score 205 stars 23 scripts

PEcAn.uncertainty - PEcAn Functions Used for Propagating and Partitioning Uncertainties in Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

8.87 score 205 stars 5 dependents 15 scripts

PEcAn.photosynthesis - PEcAn functions used for leaf-level photosynthesis calculations

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. The PEcAn.photosynthesis package contains functions used in the Hierarchical Bayesian calibration of the Farquhar et al 1980 model.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

8.79 score 205 stars 19 scripts

PEcAn.emulator - Gausian Process Emulator

Implementation of a Gaussian Process model (both likelihood and bayesian approaches) for kriging and model emulation. Includes functions for sampling design and prediction.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

8.77 score 205 stars 6 dependents 1 scripts

PEcAn.workflow - PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides workhorse functions that can be used to run the major steps of a PEcAn analysis.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

8.77 score 205 stars 4 dependents 15 scripts

PEcAn.SIPNET - PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

8.30 score 205 stars 61 scripts

PEcAn.LINKAGES - PEcAn Package for Integration of the LINKAGES Model

This module provides functions to link the (LINKAGES) to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

8.28 score 205 stars 59 scripts

PEcAnAssimSequential - PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

8.06 score 205 stars 35 scripts

PEcAn.data.remote - PEcAn Functions Used for Extracting Remote Sensing Data

PEcAn module for processing remote data. Python module requirements: requests, json, re, ast, panads, sys. If any of these modules are missing, install using pip install <module name>.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.99 score 205 stars 1 dependents 6 scripts

PEcAn.DALEC - PEcAn Package for Integration of the DALEC Model

This module provides functions to link DALEC to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars 8 scripts

PEcAn.ModelName - PEcAn Package for Integration of the ModelName Model

This module provides functions to link the (ModelName) to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars

PEcAn.LDNDC - PEcAn package for integration of the LDNDC model

This module provides functions to link the (LDNDC) to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

7.51 score 205 stars

PEcAn.JULES - PEcAn Package for Integration of the JULES Model

This module provides functions to link the (JULES) to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars

PEcAn.STICS - PEcAn Package for Integration of the STICS Model

This module provides functions to link the STICS to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars

PEcAn.PRELES - PEcAn Package for Integration of the PRELES Model

This module provides functions to run the PREdict Light use efficiency Evapotranspiration and Soil moisture (PRELES) model on the PEcAn project. The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool designed to simplify the management of model parameterization,execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars 4 scripts

PEcAn.SIBCASA - PEcAn Package for Integration of the SiBCASA Model

This module provides functions to link (SiBCASA) to PEcAn. It is a work in progress and is not yet fully functional.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars

PEcAn.BASGRA - PEcAn Package for Integration of the BASGRA Model

This module provides functions to link the BASGRA model to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsfortranglibc

7.51 score 205 stars 1 scripts

PEcAn.CLM45 - PEcAn Package for Integration of CLM4.5 Model

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides functions to link the Community Land Model, version 4.5, to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars 1 scripts

PEcAn.dvmdostem - PEcAn Package for Integration of the Dvmdostem Model

This module provides functions to link the dvmdostem model to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars 3 scripts

PEcAn.CABLE - PEcAn package for integration of the CABLE model

This module provides functions to link the (CABLE) to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars

PEcAn.data.mining - PEcAn Functions Used for Exploring Model Residuals and Structures

(Temporary description) PEcAn functions used for exploring model residuals and structures.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars 1 scripts

PEcAn.MAESPA - PEcAn Functions Used for Ecological Forecasts and Reanalysis using MAESPA

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.This package allows for MAESPA to be run through the PEcAN workflow.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars 2 scripts

PEcAn.LPJGUESS - PEcAn Package for Integration of the LPJ-GUESS Model

This module provides functions to link LPJ-GUESS to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars 1 scripts

PEcAn.GDAY - PEcAn Package for Integration of the GDAY Model

This module provides functions to link the GDAY model to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars 1 scripts

PEcAn.FATES - PEcAn Package for Integration of FATES Model

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides functions to link the FATES model to PEcAn.

Last updated 9 days ago

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

7.51 score 205 stars 6 scripts