PEcAn.DB - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
11.85 score 202 stars 27 packages 127 scriptsPEcAn.data.atmosphere - PEcAn Functions Used for Managing Climate Driver Data
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The PECAn.data.atmosphere package converts climate driver data into a standard format for models integrated into PEcAn. As a standalone package, it provides an interface to access diverse climate data sets.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
11.57 score 202 stars 14 packages 64 scriptsPEcAn.visualization - PEcAn visualization functions
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This module is used to create more complex visualizations from the data generated by PEcAn code, specifically the models.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
10.93 score 202 stars 11 packages 74 scriptsPEcAn.utils - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
10.90 score 202 stars 35 packages 218 scriptsPEcAn.benchmark - PEcAn Functions Used for Benchmarking
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
10.68 score 202 stars 11 packages 416 scriptsBayesianTools - General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
General-purpose MCMC and SMC samplers, as well as plots and diagnostic functions for Bayesian statistics, with a particular focus on calibrating complex system models. Implemented samplers include various Metropolis MCMC variants (including adaptive and/or delayed rejection MH), the T-walk, two differential evolution MCMCs, two DREAM MCMCs, and a sequential Monte Carlo (SMC) particle filter.
Last updated 10 months ago
bayesecological-modelsmcmcoptimizationsmcsystems-biology
10.53 score 119 stars 4 packages 562 scripts 719 downloadsPEcAn.settings - PEcAn Settings package
Contains functions to read PEcAn settings files.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.98 score 202 stars 17 packages 54 scriptsPEcAn.assim.batch - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.92 score 202 stars 2 packages 20 scriptsPEcAn.priors - PEcAn Functions Used to Estimate Priors from Data
Functions to estimate priors from data.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.91 score 202 stars 6 packages 13 scriptsPEcAn.MA - PEcAn Functions Used for Meta-Analysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. The PEcAn.MA package contains the functions used in the Bayesian meta-analysis of trait data.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.86 score 202 stars 7 packages 7 scriptsPEcAn.ED2 - PEcAn Package for Integration of ED2 Model
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides functions to link the Ecosystem Demography Model, version 2, to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.70 score 202 stars 145 scriptsPEcAn.remote - PEcAn Model Execution Utilities
This package contains utilities for communicating with and executing code on local and remote hosts. In particular, it has PEcAn-specific utilities for starting ecosystem model runs.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.64 score 202 stars 32 packages 13 scriptsPEcAn.logger - Logger Functions for 'PEcAn'
Convenience functions for logging outputs from 'PEcAn', the Predictive Ecosystem Analyzer (LeBauer et al. 2017) <doi:10.1890/12-0137.1>. Enables the user to set what level of messages are printed, as well as whether these messages are written to the console, a file, or both. It also allows control over whether severe errors should stop execution of the 'PEcAn' workflow; this allows strictness when debugging and lenience when running large batches of simulations that should not be terminated by errors in individual models. It is loosely based on the 'log4j' package.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.62 score 202 stars 40 packages 7 scriptsPEcAn.data.land - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.30 score 202 stars 10 packages 19 scriptsPEcAn.allometry - PEcAn Allometry Functions
Synthesize allometric equations or fit allometries to data.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.06 score 202 stars 33 scriptsPEcAn.qaqc - QAQC
PEcAn integration and model skill testing
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
9.02 score 202 stars 5 scriptsPEcAn.all - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.97 score 202 stars 266 scriptsPEcAn.MAAT - PEcAn Package for Integration of the MAAT Model
This module provides functions to wrap the MAAT model into the PEcAn workflows.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.92 score 202 stars 12 scriptsPEcAn.BIOCRO - PEcAn Package for Integration of the BioCro Model
This module provides functions to link BioCro to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.90 score 202 stars 23 scriptsPEcAn.uncertainty - PEcAn Functions Used for Propagating and Partitioning Uncertainties in Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.89 score 202 stars 5 packages 15 scriptsPEcAn.photosynthesis - PEcAn functions used for leaf-level photosynthesis calculations
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. The PEcAn.photosynthesis package contains functions used in the Hierarchical Bayesian calibration of the Farquhar et al 1980 model.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.82 score 202 stars 19 scriptsPEcAn.emulator - Gausian Process Emulator
Implementation of a Gaussian Process model (both likelihood and bayesian approaches) for kriging and model emulation. Includes functions for sampling design and prediction.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.80 score 202 stars 6 packages 1 scriptsPEcAn.workflow - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides workhorse functions that can be used to run the major steps of a PEcAn analysis.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.80 score 202 stars 4 packages 15 scriptsPEcAnRTM - PEcAn Functions Used for Radiative Transfer Modeling
Functions for performing forward runs and inversions of radiative transfer models (RTMs). Inversions can be performed using maximum likelihood, or more complex hierarchical Bayesian methods. Underlying numerical analyses are optimized for speed using Fortran code.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.66 score 202 stars 132 scriptsPEcAn.SIPNET - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.33 score 202 stars 61 scriptsPEcAn.LINKAGES - PEcAn Package for Integration of the LINKAGES Model
This module provides functions to link the (LINKAGES) to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.31 score 202 stars 59 scriptsPEcAnAssimSequential - PEcAn Functions Used for Ecological Forecasts and Reanalysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.08 score 202 stars 35 scriptsPEcAn.data.remote - PEcAn Functions Used for Extracting Remote Sensing Data
PEcAn module for processing remote data. Python module requirements: requests, json, re, ast, panads, sys. If any of these modules are missing, install using pip install <module name>.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
8.02 score 202 stars 1 packages 6 scriptsPEcAn.FATES - PEcAn Package for Integration of FATES Model
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides functions to link the FATES model to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 stars 6 scriptsPEcAn.DALEC - PEcAn Package for Integration of the DALEC Model
This module provides functions to link DALEC to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 stars 8 scriptsPEcAn.ModelName - PEcAn Package for Integration of the ModelName Model
This module provides functions to link the (ModelName) to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 starsPEcAn.LPJGUESS - PEcAn Package for Integration of the LPJ-GUESS Model
This module provides functions to link LPJ-GUESS to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 stars 1 scriptsPEcAn.SIBCASA - PEcAn Package for Integration of the SiBCASA Model
This module provides functions to link (SiBCASA) to PEcAn. It is a work in progress and is not yet fully functional.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 starsPEcAn.BASGRA - PEcAn Package for Integration of the BASGRA Model
This module provides functions to link the BASGRA model to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 stars 1 scriptsPEcAn.MAESPA - PEcAn Functions Used for Ecological Forecasts and Reanalysis using MAESPA
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.This package allows for MAESPA to be run through the PEcAN workflow.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 stars 2 scriptsPEcAn.PRELES - PEcAn Package for Integration of the PRELES Model
This module provides functions to run the PREdict Light use efficiency Evapotranspiration and Soil moisture (PRELES) model on the PEcAn project. The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool designed to simplify the management of model parameterization,execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 stars 4 scriptsPEcAn.GDAY - PEcAn Package for Integration of the GDAY Model
This module provides functions to link the GDAY model to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 stars 1 scriptsPEcAn.STICS - PEcAn Package for Integration of the STICS Model
This module provides functions to link the STICS to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 starsPEcAn.CABLE - PEcAn package for integration of the CABLE model
This module provides functions to link the (CABLE) to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 starsPEcAn.dvmdostem - PEcAn Package for Integration of the Dvmdostem Model
This module provides functions to link the dvmdostem model to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 stars 3 scriptsPEcAn.CLM45 - PEcAn Package for Integration of CLM4.5 Model
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides functions to link the Community Land Model, version 4.5, to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 stars 1 scriptsPEcAn.data.mining - PEcAn Functions Used for Exploring Model Residuals and Structures
(Temporary description) PEcAn functions used for exploring model residuals and structures.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.54 score 202 stars 1 scriptsPEcAn.LDNDC - PEcAn package for integration of the LDNDC model
This module provides functions to link the (LDNDC) to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.53 score 202 starsPEcAn.JULES - PEcAn Package for Integration of the JULES Model
This module provides functions to link the (JULES) to PEcAn.
Last updated 4 days ago
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
7.53 score 202 stars