Package: PEcAn.remote 1.8.0.9000

Rob Kooper

PEcAn.remote: PEcAn Model Execution Utilities

This package contains utilities for communicating with and executing code on local and remote hosts. In particular, it has PEcAn-specific utilities for starting ecosystem model runs.

Authors:David LeBauer [aut], Rob Kooper [aut, cre], Shawn Serbin [aut], Alexey Shiklomanov [aut], Shashank Singh [aut], Chris Black [aut], University of Illinois, NCSA [cph]

PEcAn.remote_1.8.0.9000.tar.gz
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PEcAn.remote.pdf |PEcAn.remote.html✨
PEcAn.remote/json (API)
NEWS

# Install 'PEcAn.remote' in R:

install.packages('PEcAn.remote', repos = c('https://pecanproject.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pecanproject/pecan/issues

On CRAN:

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

22 exports 202 stars 6.89 score 38 dependencies 32 dependents 13 scripts

Last updated 5 hours agofrom:f22a7c4bbc. Checks:OK: 4 ERROR: 3. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 18 2024
R-4.5-win	ERROR	Sep 18 2024
R-4.5-linux	OK	Sep 18 2024
R-4.4-win	ERROR	Sep 18 2024
R-4.4-mac	OK	Sep 18 2024
R-4.3-win	ERROR	Sep 18 2024
R-4.3-mac	OK	Sep 18 2024

Exports:check_model_run fqdn is.localhost kill.tunnel merge_job_files open_tunnel qsub_get_jobid qsub_parallel qsub_run_finished rabbitmq_get_message rabbitmq_post_message remote.copy.from remote.copy.to remote.execute.cmd remote.execute.R runModule.start.model.runs setup_modellauncher start_qsub start_rabbitmq start_serial start.model.runs test_remote

Dependencies:askpass cli codetools curl digest dplyr fansi foreach furrr future generics globals glue httr iterators jsonlite lifecycle listenv magrittr mime openssl parallelly PEcAn.logger pillar pkgconfig purrr R6 Rcpp rlang stringi sys tibble tidyselect triebeard urltools utf8 vctrs withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Check if model run was successful	check_model_run
Returns the fully qualified hostname.	fqdn
Check if local host	is.localhost
Kill tunnel to remote machine	kill.tunnel
Merge multiple job.sh files into one larger file.	merge_job_files
Open an SSH tunnel, prompting for passwords as needed	open_tunnel
Get Job ID from qsub output	qsub_get_jobid
qsub_parallel	qsub_parallel
Check if qsub run finished	qsub_run_finished
Create a queue in RabbitMQ.	rabbitmq_create_queue
Get message from RabbitMQ.	rabbitmq_get_message
parse the RabbiMQ URI.	rabbitmq_parse_uri
Post message to RabbitMQ.	rabbitmq_post_message
Send a message to RabbitMQ rest API.	rabbitmq_send_message
Copy file from remote to local	remote.copy.from
Copy file/dir to remote server from local server	remote.copy.to
Execute command remotely	remote.execute.cmd
Execute command remotely	remote.execute.R
Setup model launcher script and job list	setup_modellauncher
Start qsub runs	start_qsub
Start model execution using rabbitmq	start_rabbitmq
Start model execution in serial mode	start_serial
Start selected ecosystem model runs within PEcAn workflow	runModule.start.model.runs start.model.runs
Test remote execution	test_remote