Package: PEcAn.photosynthesis 1.7.3.9000

Mike Dietze

PEcAn.photosynthesis: PEcAn functions used for leaf-level photosynthesis calculations

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. The PEcAn.photosynthesis package contains functions used in the Hierarchical Bayesian calibration of the Farquhar et al 1980 model.

Authors:Mike Dietze [aut, cre], Xiaohui Feng [aut], Shawn Serbin [aut], Shashank Singh [aut], Chris Black [ctb], University of Illinois, NCSA [cph]

PEcAn.photosynthesis_1.7.3.9000.tar.gz
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PEcAn.photosynthesis.pdf |PEcAn.photosynthesis.html✨
PEcAn.photosynthesis/json (API)
NEWS

# Install 'PEcAn.photosynthesis' in R:
install.packages('PEcAn.photosynthesis', repos = c('https://pecanproject.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pecanproject/pecan/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplantsjagscpp

8.84 score 215 stars 19 scripts 5 exports 3 dependencies

Last updated 3 days agofrom:78701515a6. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 07 2025
R-4.5-winNOTEMar 07 2025
R-4.5-macNOTEMar 07 2025
R-4.5-linuxNOTEMar 07 2025
R-4.4-winNOTEMar 07 2025
R-4.4-macNOTEMar 07 2025
R-4.4-linuxNOTEMar 07 2025
R-4.3-winNOTEMar 07 2025
R-4.3-macNOTEMar 07 2025

Exports:estimate_modefitALicor_QCplot_photoread_Licor

Dependencies:codalatticerjags

Fitting Hierarchical Bayes photosynthetic response curves

Mike Dietze

Rendered fromResponseCurves.Rmdusingknitr::rmarkdownon Mar 07 2025.

Last update: 2023-01-30
Started: 2015-07-02

Readme and manuals

Help Manual

Help pageTopics
estimate_modeestimate_mode
fitAfitA
Licor_QCLicor_QC
plot_photoplot_photo
read_Licorread_Licor