Package: PEcAn.workflow 1.10.0.9000

David LeBauer

PEcAn.workflow: PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides workhorse functions that can be used to run the major steps of a PEcAn analysis.

Authors:Mike Dietze [aut], David LeBauer [aut, cre], Xiaohui Feng [aut], Dan Wang [aut], Carl Davidson [aut], Rob Kooper [aut], Shawn Serbin [aut], University of Illinois, NCSA [cph]

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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PEcAn.workflow/json (API)

# Install 'PEcAn.workflow' in R:
install.packages('PEcAn.workflow', repos = c('https://pecanproject.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pecanproject/pecan/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

pecandata-assimilationecosystem-modelingreproducibilitybayesiancyberinfrastructuredata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationplantsjagscpp

9.03 score 236 stars 4 packages 15 scripts 6 exports 206 dependencies

Last updated from:b96f0f019e. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK188
source / vignettesOK316
linux-release-x86_64OK195
macos-release-arm64OK101
macos-oldrel-arm64OK127
windows-develOK112
windows-releaseOK129
windows-oldrelOK97
wasm-releaseOK221

Exports:do_conversionsrun.write.configsrunModule_start_model_runsrunModule.get.trait.datarunModule.run.write.configsstart_model_runs

Dependencies:abindamerifluxrarrowaskpassassertthatbase64encbigleafbitbit64bitopsblobbootbslibcacachemcallrcellrangerclassclassIntclicliprclueclustercodacodetoolscolorspacecommonmarkcpp11crayoncrosstalkcurldata.tableDBIdbplyrdendextendDEoptimRdigestdoParalleldplyrdtwdtwclustduckdbe1071eggevaluatefarverfastmapflexclustfontawesomeforeachfsfurrrfuturegclusgenericsgeonamesggplot2ggrepelglobalsgluegridExtragtableheatmaplyherehighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2isobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelistenvlubridatemagrittrMASSMatrixMatrixModelsmcmcMCMCpackmemoisemgcvmimemlegpmodeltoolsMODISToolsmvtnormncdf4nlmenumbersopenssloptparseotelparallellyPEcAn.data.atmospherePEcAn.data.landPEcAn.data.remotePEcAn.DBPEcAn.emulatorPEcAn.loggerPEcAn.MAPEcAn.priorsPEcAn.remotePEcAn.settingsPEcAn.uncertaintyPEcAn.utilspermutepillarpkgconfigplotlyplyrpngprettyunitsprocessxprogresspromisesproxypspurrrqapquantregR.methodsS3R.ooR.utilsR6randtoolboxrappdirsrasterRColorBrewerRcppRcppArmadilloRcppEigenRcppParallelRcppThreadRcppTOMLRCurlreadrreadxlREddyProcregistryrematchreshape2reticulaterjagsrjsonrlangrmarkdownrngWELLrobustbaserprojrootRSpectras2S7sassscalessensitivityseriationsfshinyshinyjssolartimesourcetoolsspSparseMstringistringrsuntoolssurvivalsysterratibbletidyrtidyselecttimechangetinytextriebeardtruncnormTSPtzdbunitsurltoolsutf8vctrsveganviridisviridisLitevroomwebshotwithrwkxfunXMLxtablextsyamlzoo