Package: PEcAn.workflow 1.8.0.9000

David LeBauer

PEcAn.workflow: PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides workhorse functions that can be used to run the major steps of a PEcAn analysis.

Authors:Mike Dietze [aut], David LeBauer [aut, cre], Xiaohui Feng [aut], Dan Wang [aut], Carl Davidson [aut], Rob Kooper [aut], Shawn Serbin [aut], University of Illinois, NCSA [cph]

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PEcAn.workflow.pdf |PEcAn.workflow.html✨
PEcAn.workflow/json (API)
NEWS

# Install 'PEcAn.workflow' in R:
install.packages('PEcAn.workflow', repos = c('https://pecanproject.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/pecanproject/pecan/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3

On CRAN:

bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants

8.79 score 203 stars 4 packages 15 scripts 8 exports 231 dependencies

Last updated 4 hours agofrom:cab30e89b4. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 20 2024
R-4.5-winOKNov 20 2024
R-4.5-linuxOKNov 20 2024
R-4.4-winOKNov 20 2024
R-4.4-macOKNov 20 2024
R-4.3-winOKNov 20 2024
R-4.3-macOKNov 20 2024

Exports:create_execute_test_xmldo_conversionsmodel_specific_tagsrun.write.configsrunModule_start_model_runsrunModule.get.trait.datarunModule.run.write.configsstart_model_runs

Dependencies:abindadmiscamerifluxrarrowaskpassassertthatbase64encbigleafbitbit64bitopsblobbootbslibcacachemcallrCDMcellrangerclassclassIntclicliprclueclustercodacodetoolscolorspacecpp11crayoncrosstalkcrulcurldata.tableDBIdbplyrdeldirdendextendDEoptimRdigestdownloaderdplRdplyrduckdbduckdbfse1071eggevaluatefansifarverfastmapfauxpasfBasicsfontawesomeforeachfsfurrrfuturegclusgenericsgeonamesgetoptggplot2ggrepelglobalsgluegridExtragssgtableHDIntervalheatmaplyhighrhmshtmltoolshtmlwidgetshttpcodehttrigraphisobanditeratorsjquerylibjsonliteKernSmoothkknnknitrlabelinglaterlatticelazyevallifecyclelistenvlubridatemagrittrMASSMatrixMatrixModelsmatrixStatsmcmcMCMCpackmemoisemgcvmimemlegpmodeestmunsellmvtnormncdf4neonstoreneonUtilitiesnlmenneoopenssloptparseparallellypbapplypbvPEcAn.benchmarkPEcAn.data.atmospherePEcAn.data.landPEcAn.DBPEcAn.emulatorPEcAn.loggerPEcAn.MAPEcAn.priorsPEcAn.remotePEcAn.settingsPEcAn.uncertaintyPEcAn.utilsPEcAn.visualizationpermutepillarpkgconfigplotlyplyrpngpolyclippolycorprettyunitsprocessxprogresspromisesproxypspurrrqapquantregR.methodsS3R.ooR.utilsR6randtoolboxrappdirsrasterRColorBrewerRcppRcppArmadilloRCurlreadrreadxlREddyProcregistryrematchreshape2rjagsrjsonrlangrmarkdownrmutilrngWELLrobustbaserpartrunjagss2sassscalesseriationsfsignalSimilarityMeasuressirtsolartimespSparseMspatialspatstat.dataspatstat.geomspatstat.univarspatstat.utilsstablestablediststatipstorrstringistringrsuntoolssurvivalswfscMiscsysTAMterrathortibbletidyrtidyselecttimechangetimeDatetimeSeriestinytextraitstriebeardtruncnormTSPtzdbunitsurltoolsutf8vctrsveganviridisviridisLitevroomwebshotwhiskerwithrwkxfunXMLxtsyamlzipzoo