Package: PEcAn.MA 1.7.2
David LeBauer
PEcAn.MA: PEcAn Functions Used for Meta-Analysis
The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. The PEcAn.MA package contains the functions used in the Bayesian meta-analysis of trait data.
Authors:
PEcAn.MA_1.7.2.tar.gz
PEcAn.MA_1.7.2.zip(r-4.5)PEcAn.MA_1.7.2.zip(r-4.4)PEcAn.MA_1.7.2.zip(r-4.3)
PEcAn.MA_1.7.2.tgz(r-4.4-any)PEcAn.MA_1.7.2.tgz(r-4.3-any)
PEcAn.MA_1.7.2.tar.gz(r-4.5-noble)PEcAn.MA_1.7.2.tar.gz(r-4.4-noble)
PEcAn.MA_1.7.2.tgz(r-4.4-emscripten)PEcAn.MA_1.7.2.tgz(r-4.3-emscripten)
PEcAn.MA.pdf |PEcAn.MA.html✨
PEcAn.MA/json (API)
| # Install PEcAn.MA in R: |
| install.packages('PEcAn.MA', repos = c('https://pecanproject.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/pecanproject/pecan/issues
bayesiancyberinfrastructuredata-assimilationdata-scienceecosystem-modelecosystem-scienceforecastingmeta-analysisnational-science-foundationpecanplants
Last updated 6 days agofrom:d5c7bffdf2
Exports:approx.posteriorjagifypecan.mapecan.ma.summaryrename_jags_columnsrun.meta.analysisrunModule.run.meta.analysissingle.MA
Dependencies:abindaskpassblobclicodacodetoolscpp11curlDBIdbplyrdigestdplyrfansiforeachfsfurrrfuturegenericsgetoptglobalsgluehttriteratorsjsonlitelatticelifecyclelistenvlubridatemagrittrMASSmimencdf4openssloptparseparallellyPEcAn.DBPEcAn.loggerPEcAn.remotePEcAn.settingsPEcAn.utilspillarpkgconfigpurrrR.methodsS3R.ooR.utilsR6Rcpprjagsrlangstringistringrsystibbletidyrtidyselecttimechangetriebeardunitsurltoolsutf8vctrswithrXML
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Approximate posterior | approx.posterior |
| Prepare trait data for JAGS meta-analysis | jagify |
| find quantile of point within prior distribution | p.point.in.prior |
| Trait Meta-analysis | pecan.ma |
| Generate summary statistics and diagnostics for PEcAn meta.analysis | pecan.ma.summary |
| renames the variables within output data frame trait.data | rename_jags_columns |
| Run meta analysis | run.meta.analysis |
| Run meta-analysis on all PFTs in a (list of) PEcAn settings | runModule.run.meta.analysis |
| Single MA | single.MA |
| Function to remove NA values from database queries | transform.nas |
| write.ma.model | write.ma.model |
