Package: PEcAn.BIOCRO 1.7.3.9000

David LeBauer

PEcAn.BIOCRO: PEcAn Package for Integration of the BioCro Model

This module provides functions to link BioCro to PEcAn.

Authors:David LeBauer, Deepak Jaiswal, Christopher Black

PEcAn.BIOCRO_1.7.3.9000.tar.gz
PEcAn.BIOCRO_1.7.3.9000.zip(r-4.5)PEcAn.BIOCRO_1.7.3.9000.zip(r-4.4)PEcAn.BIOCRO_1.7.3.9000.zip(r-4.3)
PEcAn.BIOCRO_1.7.3.9000.tgz(r-4.4-any)PEcAn.BIOCRO_1.7.3.9000.tgz(r-4.3-any)
PEcAn.BIOCRO_1.7.3.9000.tar.gz(r-4.5-noble)PEcAn.BIOCRO_1.7.3.9000.tar.gz(r-4.4-noble)
PEcAn.BIOCRO_1.7.3.9000.tgz(r-4.4-emscripten)PEcAn.BIOCRO_1.7.3.9000.tgz(r-4.3-emscripten)
PEcAn.BIOCRO.pdf |PEcAn.BIOCRO.html✨
PEcAn.BIOCRO/json (API)
NEWS

# Install 'PEcAn.BIOCRO' in R:

install.packages('PEcAn.BIOCRO', repos = c('https://pecanproject.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pecanproject/pecan/issues

Uses libs:

jags– Just Another Gibbs Sampler for Bayesian MCMC
c++– GNU Standard C++ Library v3

On CRAN:

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants jags cpp

8.88 score 211 stars 23 scripts 9 exports 219 dependencies

Last updated 5 hours agofrom:86a5ccaa8d. Checks:1 OK, 6 ERROR. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 18 2025
R-4.5-win	ERROR	Jan 18 2025
R-4.5-linux	ERROR	Jan 18 2025
R-4.4-win	ERROR	Jan 18 2025
R-4.4-mac	ERROR	Jan 18 2025
R-4.3-win	ERROR	Jan 18 2025
R-4.3-mac	ERROR	Jan 18 2025

Exports:cf2biocro convert.samples.BIOCRO get_biocro_defaults met2model.BIOCRO model2netcdf.BIOCRO read.biocro.config remove.config.BIOCRO run.biocro write.config.BIOCRO

Dependencies:abind admisc amerifluxr arrow askpass assertthat base64enc bigleaf bit bit64 bitops blob boot bslib ca cachem callr CDM cellranger class classInt cli clipr clue cluster coda codetools colorspace cpp11 crayon crosstalk crul curl data.table DBI dbplyr deldir dendextend DEoptimR digest downloader dplR dplyr duckdb duckdbfs e1071 egg evaluate fansi farver fastmap fauxpas fBasics fontawesome foreach fs furrr future gclus generics geonames getopt ggplot2 ggrepel globals glue gridExtra gss gtable HDInterval heatmaply highr hms htmltools htmlwidgets httpcode httr igraph isoband iterators jquerylib jsonlite KernSmooth kknn knitr labeling later lattice lazyeval lifecycle listenv lubridate magrittr MASS Matrix matrixStats memoise mgcv mime mlegp modeest munsell mvtnorm ncdf4 neonstore neonUtilities nlme nneo openssl optparse parallelly pbapply pbv PEcAn.benchmark PEcAn.data.atmosphere PEcAn.data.land PEcAn.DB PEcAn.logger PEcAn.remote PEcAn.settings PEcAn.utils PEcAn.visualization permute pillar pkgconfig plotly plyr png polyclip polycor prettyunits processx progress promises proxy ps purrr qap R.methodsS3 R.oo R.utils R6 rappdirs raster RColorBrewer Rcpp RcppArmadillo RCurl readr readxl REddyProc registry rematch reshape2 rjags rjson rlang rmarkdown rmutil robustbase rpart runjags s2 sass scales seriation sf signal SimilarityMeasures sirt solartime sp spatial spatstat.data spatstat.geom spatstat.univar spatstat.utils stable stabledist statip storr stringi stringr suntools swfscMisc sys TAM terra thor tibble tidyr tidyselect timechange timeDate timeSeries tinytex traits triebeard truncnorm TSP tzdb units urltools utf8 vctrs vegan viridis viridisLite vroom webshot whisker withr wk xfun XML xts yaml zip zoo

Sensitivity analysis on C4 grass model

Rendered fromC4grass_sa_vd.Rmdusingknitr::rmarkdownon Jan 18 2025.

Last update: 2024-09-23
Started: 2016-03-15

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Converts a CF data frame into a BioCro met input	cf2biocro
convert parameters from PEcAn database default units to biocro defaults	convert.samples.BIOCRO
Look for defaults provided as datasets in the BioCro model package	get_biocro_defaults
Write BioCro met files	met2model.BIOCRO
Convert BioCro output to standard netCDF format	model2netcdf.BIOCRO
Read BioCro config file	read.biocro.config
Clear out previous config and parameter files.	remove.config.BIOCRO
Run BioCro at a point	run.biocro
Writes a configuration files for the biocro model	write.config.BIOCRO