Package: PEcAn.BIOCRO 1.7.2

David LeBauer

PEcAn.BIOCRO: PEcAn Package for Integration of the BioCro Model

This module provides functions to link BioCro to PEcAn.

Authors:David LeBauer, Deepak Jaiswal, Christopher Black

PEcAn.BIOCRO_1.7.2.tar.gz
PEcAn.BIOCRO_1.7.2.zip(r-4.5)PEcAn.BIOCRO_1.7.2.zip(r-4.4)PEcAn.BIOCRO_1.7.2.zip(r-4.3)
PEcAn.BIOCRO_1.7.2.tgz(r-4.4-any)PEcAn.BIOCRO_1.7.2.tgz(r-4.3-any)
PEcAn.BIOCRO_1.7.2.tar.gz(r-4.5-noble)PEcAn.BIOCRO_1.7.2.tar.gz(r-4.4-noble)
PEcAn.BIOCRO_1.7.2.tgz(r-4.4-emscripten)PEcAn.BIOCRO_1.7.2.tgz(r-4.3-emscripten)
PEcAn.BIOCRO.pdf |PEcAn.BIOCRO.html✨
PEcAn.BIOCRO/json (API)

# Install PEcAn.BIOCRO in R:

install.packages('PEcAn.BIOCRO', repos = c('https://pecanproject.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pecanproject/pecan/issues

Uses libs:

jags– Just Another Gibbs Sampler for Bayesian MCMC
c++– GNU Standard C++ Library v3

On CRAN:

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

9 exports 199 stars 6.24 score 261 dependencies

Last updated 6 days agofrom:d5c7bffdf2

Exports:cf2biocro convert.samples.BIOCRO get_biocro_defaults met2model.BIOCRO model2netcdf.BIOCRO read.biocro.config remove.config.BIOCRO run.biocro write.config.BIOCRO

Dependencies:abind admisc amerifluxr ape arrow askpass assertthat backports base64enc bigleaf bit bit64 bitops blob bold boot brew bslib ca cachem callr CDM cellranger checkmate class classInt cli clipr clue cluster coda codetools colorspace commonmark conditionz cpp11 crayon crosstalk crul curl data.table datapack DBI dbplyr deldir dendextend DEoptimR desc digest downloader dplR dplyr duckdb duckdbfs e1071 egg evaluate fansi farver fastmap fastmatch fauxpas fBasics fontawesome foreach foreign Formula fs furrr future gclus generics geonames getopt ggplot2 ggrepel globals glue gridExtra gss gtable HDInterval heatmaply highr Hmisc hms hoardr htmlTable htmltools htmlwidgets httpcode httr igraph isoband iterators jquerylib jsonlite KernSmooth kknn knitr labeling later lattice lazyeval lifecycle listenv lubridate magrittr MASS Matrix matrixStats memoise mgcv mime mlegp modeest munsell mvtnorm natserv ncdf4 neonstore neonUtilities nlme nneo nnet openssl optparse parallelly pbapply pbv PEcAn.benchmark PEcAn.data.atmosphere PEcAn.data.land PEcAn.DB PEcAn.logger PEcAn.remote PEcAn.settings PEcAn.utils PEcAn.visualization permute phangorn pillar pkgbuild pkgconfig pkgload plotly plyr png polyclip polycor prettyunits processx progress promises proxy ps purrr qap quadprog R.methodsS3 R.oo R.utils R6 rappdirs raster ratelimitr RColorBrewer Rcpp RcppArmadillo RCurl readr readxl REddyProc redland registry rematch rentrez reshape2 rex ritis rjags rjson rlang rmarkdown rmutil rncl robustbase rotl roxygen2 rpart rprojroot rredlist rstudioapi runjags rvest s2 sass scales selectr seriation sf signal SimilarityMeasures sirt solartime solrium sp spatial spatstat.data spatstat.geom spatstat.utils stable stabledist statip storr stringi stringr suntools swfscMisc sys TAM taxize terra thor tibble tidyr tidyselect timechange timeDate timeSeries tinytex traits triebeard truncnorm TSP tzdb units urltools utf8 uuid vctrs vegan viridis viridisLite vroom webshot whisker WikidataQueryServiceR WikidataR WikipediR wikitaxa withr wk worrms xfun XML xml2 xts yaml zip zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Convert CF-formatted met data to BioCro met	cf2biocro
Convert samples for biocro	convert.samples.BIOCRO
Look for defaults provided as datasets in the BioCro model package	get_biocro_defaults
Write BioCro met files	met2model.BIOCRO
Function to convert biocro model output to standard netCDF format	model2netcdf.BIOCRO
Read BioCro Config	read.biocro.config
Clear out previous biocro config and parameter files.	remove.config.BIOCRO
Run BioCro at a point	run.biocro
Write configuration files for the biocro model	write.config.BIOCRO