{ "_id": "6a4da753d253724d3f6dd06a", "Package": "PEcAnRTM", "Type": "Package", "Title": "PEcAn Functions Used for Radiative Transfer Modeling", "Version": "1.9.1.9000", "Authors@R": "c(person(\"Mike\", \"Dietze\", role = c(\"aut\"),\nemail = \"dietze@bu.edu\"),\nperson(\"Shawn\", \"Serbin\", role = c(\"aut\"),\nemail = \"sserbin@bnl.gov\"),\nperson(\"Alexey\", \"Shiklomanov\", role = c(\"aut\", \"cre\"),\nemail = \"alexey.shiklomanov@pnnl.gov\"),\nperson(\"University of Illinois, NCSA\", role = c(\"cph\")))", "Description": "Functions for performing forward runs and inversions of\nradiative transfer models (RTMs). Inversions can be performed\nusing maximum likelihood, or more complex hierarchical Bayesian\nmethods. Underlying numerical analyses are optimized for speed\nusing Fortran code.", "URL": "https://pecanproject.github.io", "BugReports": "https://github.com/PecanProject/pecan/issues", "OS_type": "unix", "License": "BSD_3_clause + file LICENSE", "Copyright": "Authors", "LazyLoad": "yes", "LazyData": "FALSE", "Encoding": "UTF-8", "VignetteBuilder": "knitr, rmarkdown", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nmake libmagick++-dev gsfonts jags libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libnetcdf-dev libssl-dev libproj-dev\npython3 libsqlite3-dev libudunits2-dev libx11-dev xz-utils\nzlib1g-dev", "Repository": "https://pecanproject.r-universe.dev", "Date/Publication": "2026-07-08 00:17:10 UTC", "RemoteUrl": "https://github.com/PecanProject/pecan", "RemoteRef": "HEAD", "RemoteSha": "770075d62a06280609933b64a2e08f51e742fc10", "RemoteSubdir": "modules/rtm", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-07-08 01:21:46 UTC", "User": "root" }, "Author": "Mike Dietze [aut],\nShawn Serbin [aut],\nAlexey Shiklomanov [aut, cre],\nUniversity of Illinois, NCSA [cph]", "Maintainer": "Alexey Shiklomanov ", "_user": "pecanproject", "_type": "src", "_file": "PEcAnRTM_1.9.1.9000.tar.gz", "_fileid": "https://r2.ropensci.org/8c97a1220eae0919be42dbfd047ce4473388a63c45b54957ff3cdefd8c674611", "_filesize": 3732862, "_sha256": "8c97a1220eae0919be42dbfd047ce4473388a63c45b54957ff3cdefd8c674611", "_expires": "2026-10-16T01:26:41.000Z", "_created": "2026-07-08T01:21:46.000Z", "_published": "2026-07-08T01:26:43.780Z", "_jobs": [ { "job": 85766856605, "time": 209, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "8155768892" }, { "job": 85766856627, "time": 199, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "8155765903" }, { "job": 85766856611, "time": 238, "config": "linux-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "8155774920" }, { "job": 85766856614, "time": 211, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8155768673" }, { "job": 85766856621, "time": 107, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "8155745351" }, { "job": 85766856619, "time": 182, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "8155761938" }, { "job": 85766856613, "time": 94, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "8155742204" }, { "job": 85766856615, "time": 211, "config": "macos-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8155768646" }, { "job": 85766266688, "time": 310, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8155720472" }, { "job": 85766856596, "time": 211, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8155768236" }, { "job": 85766856606, "time": 136, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "" }, { "job": 85766856610, "time": 108, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "" }, { "job": 85766856603, "time": 141, "config": "windows-release", "r": "4.6.1", "check": "WARNING", "artifact": "" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/pecanproject/actions/runs/28910349462", "_status": "success", "_upstream": "https://github.com/PecanProject/pecan", "_commit": { "id": "770075d62a06280609933b64a2e08f51e742fc10", "author": "Michael Dietze ", "committer": "GitHub ", "message": "Merge pull request #4042 from omkarrr2533/refactor-generators-return-samples\n\nMake ensemble generator sample in memory, stop relying on samples.Rdata side effect\n", "time": 1783469830 }, "_maintainer": { "name": "Alexey Shiklomanov", "email": "alexey.shiklomanov@pnnl.gov" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "BayesianTools", "role": "Imports" }, { "package": "coda", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "PEcAn.assim.batch", "role": "Imports" }, { "package": "PEcAn.logger", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "version": ">= 1.50", "role": "Suggests" }, { "package": "lubridate", "version": ">= 1.6.0", "role": "Suggests" }, { "package": "mclust", "role": "Suggests" }, { "package": "minpack.lm", "role": "Suggests" }, { "package": "PEcAn.ED2", "role": "Suggests" }, { "package": "PEcAn.utils", "role": "Suggests" }, { "package": "pwr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 1.0.2", "role": "Suggests" }, { "package": "XML", "role": "Suggests" } ], "_owner": "pecanproject", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-28", "n": 6 }, { "week": "2025-29", "n": 9 }, { "week": "2025-30", "n": 3 }, { "week": "2025-31", "n": 2 }, { "week": "2025-32", "n": 6 }, { "week": "2025-33", "n": 7 }, { "week": "2025-34", "n": 1 }, { "week": "2025-35", "n": 8 }, { "week": "2025-36", "n": 7 }, { "week": "2025-37", "n": 1 }, { "week": "2025-38", "n": 2 }, { "week": "2025-39", "n": 4 }, { "week": "2025-40", "n": 7 }, { "week": "2025-41", "n": 5 }, { "week": "2025-42", "n": 8 }, { "week": "2025-43", "n": 7 }, { "week": "2025-44", "n": 2 }, { "week": "2025-45", "n": 4 }, { "week": "2025-46", "n": 1 }, { "week": "2025-47", "n": 10 }, { "week": "2025-48", "n": 6 }, { "week": "2025-49", "n": 10 }, { "week": "2025-50", "n": 2 }, { "week": "2025-51", "n": 3 }, { "week": "2025-52", "n": 5 }, { "week": "2026-01", "n": 3 }, { "week": "2026-02", "n": 10 }, { "week": "2026-03", "n": 6 }, { "week": "2026-04", "n": 8 }, { "week": "2026-05", "n": 2 }, { "week": "2026-06", "n": 4 }, { "week": "2026-07", "n": 5 }, { "week": "2026-08", "n": 8 }, { "week": "2026-09", "n": 8 }, { "week": "2026-10", "n": 11 }, { "week": "2026-11", "n": 8 }, { "week": "2026-12", "n": 9 }, { "week": "2026-13", "n": 10 }, { "week": "2026-14", "n": 5 }, { "week": "2026-15", "n": 7 }, { "week": "2026-16", "n": 5 }, { "week": "2026-17", "n": 18 }, { "week": "2026-18", "n": 4 }, { "week": "2026-19", "n": 7 }, { "week": "2026-20", "n": 12 }, { "week": "2026-21", "n": 12 }, { "week": "2026-22", "n": 2 }, { "week": "2026-23", "n": 9 }, { "week": "2026-25", "n": 1 }, { "week": "2026-26", "n": 6 }, { "week": "2026-27", "n": 2 }, { "week": "2026-28", "n": 5 } ], "_tags": [ { "name": "v1.10.0", "date": "2026-01-06" } ], "_topics": [ "radiative-transfer-modeling", "bayesian-inversion", "pecan", "bayesian", "cyberinfrastructure", "data-assimilation", "data-science", "ecosystem-model", "ecosystem-science", "forecasting", "meta-analysis", "national-science-foundation", "plants", "glibc", "jags", "cpp" ], "_stars": 237, "_contributors": [ { "user": "mdietze", "count": 3204, "uuid": 3081466 }, { "user": "dlebauer", "count": 2749, "uuid": 464871 }, { "user": "infotroph", "count": 2566, "uuid": 1256435 }, { "user": "ashiklom", "count": 1670, "uuid": 5680221 }, { "user": "robkooper", "count": 1645, "uuid": 1580696 }, { "user": "istfer", "count": 1462, "uuid": 13728388 }, { "user": "tonygardella", "count": 1019, "uuid": 8570691 }, { "user": "bcow", "count": 712, "uuid": 5503595 }, { "user": "para2x", "count": 694, "uuid": 7999941 }, { "user": "aariq", "count": 450, "uuid": 25404783 }, { "user": "divine7022", "count": 445, "uuid": 172599013 }, { "user": "meetagrawal09", "count": 372, "uuid": 73902874 }, { "user": "liamburke24", "count": 343, "uuid": 29068693 }, { "user": "araiho", "count": 342, "uuid": 3520982 }, { "user": "aritradey-dev", "count": 328, "uuid": 155592377 }, { "user": "dongchenz", "count": 313, "uuid": 82834956 }, { "user": "bpbond", "count": 279, "uuid": 1956468 }, { "user": "moki1202", "count": 260, "uuid": 73598347 }, { "user": "ayushprd", "count": 238, "uuid": 11568631 }, { "user": "annethomas", "count": 228, "uuid": 24909306 }, { "user": "luke-dramko", "count": 226, "uuid": 38334039 }, { "user": "nanu1605", "count": 218, "uuid": 83662210 }, { "user": "sweetdevil144", "count": 182, "uuid": 117591942 }, { "user": "ankurdesai", "count": 174, "uuid": 3084183 }, { "user": "henrikajasilta", "count": 134, "uuid": 92798719 }, { "user": "tobeycarman", "count": 122, "uuid": 838735 }, { "user": "sambhavnoobcoder", "count": 115, "uuid": 94298612 }, { "user": "jam2767", "count": 106, "uuid": 3688280 }, { "user": "amanskywalker", "count": 99, "uuid": 11332585 }, { "user": "crollinson", "count": 99, "uuid": 7927379 }, { "user": "tezansahu", "count": 96, "uuid": 31898274 }, { "user": "blesson-07", "count": 88, "uuid": 169597508 }, { "user": "mukulmaheshwari", "count": 79, "uuid": 31155543 }, { "user": "apourmok", "count": 77, "uuid": 5833759 }, { "user": "anshul23102", "count": 63, "uuid": 167362756 }, { "user": "rahul799", "count": 63, "uuid": 41531498 }, { "user": "abbylewis", "count": 60, "uuid": 51751937 }, { "user": "s1ddhey", "count": 58, "uuid": 141068820 }, { "user": "mccabete", "count": 57, "uuid": 21266199 }, { "user": "sl4397", "count": 57, "uuid": 47115446 }, { "user": "man080107", "count": 54, "uuid": 193199761 }, { "user": "yinghaosunn", "count": 47, "uuid": 177382441 }, { "user": "snafkin547", "count": 46, "uuid": 62607343 }, { "user": "shubhamagarwal92", "count": 44, "uuid": 7984532 }, { "user": "hardimanb", "count": 43, "uuid": 3246925 }, { "user": "omkarrr2533", "count": 42, "uuid": 201979858 }, { "user": "mdekauwe", "count": 41, "uuid": 278045 }, { "user": "kristinariemer", "count": 41, "uuid": 6686508 }, { "user": "ch1eroe1", "count": 39, "uuid": 12739945 }, { "user": "bailsofhay", "count": 31, "uuid": 34662202 }, { "user": "allgandalf", "count": 27, "uuid": 110545952 }, { "user": "ayushman1210", "count": 21, "uuid": 138183570 }, { "user": "harshagr70", "count": 17, "uuid": 73224301 }, { "user": "chaneyfink", "count": 17, "uuid": 149990854 }, { "user": "its-maniaco", "count": 16, "uuid": 21123621 }, { "user": "kragosta", "count": 14, "uuid": 29147491 }, { "user": "tonycohen", "count": 13, "uuid": 3101971 }, { "user": "magicforrest", "count": 13, "uuid": 6500068 }, { "user": "clarissecheung", "count": 12, "uuid": 94148940 }, { "user": "zhangwenx", "count": 12, "uuid": 9668009 }, { "user": "sarahkanee", "count": 12, "uuid": 106052715 }, { "user": "chris-schnaufer", "count": 12, "uuid": 45463434 }, { "user": "yan130", "count": 10, "uuid": 4979985 }, { "user": "koolgax99", "count": 10, "uuid": 55532999 }, { "user": "chaitanyachavali", "count": 9, "uuid": 13823292 }, { "user": "thomas-sedhom", "count": 9, "uuid": 147952292 }, { "user": "qianyuxuan", "count": 8, "uuid": 21245183 }, { "user": "qdbell", "count": 7, "uuid": 5080358 }, { "user": "arob5", "count": 7, "uuid": 30061879 }, { "user": "akash-paluvai", "count": 6, "uuid": 144153704 }, { "user": "hhh-hyc", "count": 6, "uuid": 75413280 }, { "user": "sbs2019", "count": 6, "uuid": 15755183 }, { "user": "jingxia", "count": 5, "uuid": 3708910 }, { "user": "katherineanne21", "count": 5, "uuid": 157232885 }, { "user": "tejas7007", "count": 5, "uuid": 201401431 }, { "user": "hangyakuzero", "count": 5, "uuid": 46108879 }, { "user": "bjarneh22", "count": 5, "uuid": 80625035 }, { "user": "djaiswal", "count": 4, "uuid": 6233112 }, { "user": "krishnashuk", "count": 4, "uuid": 174427186 }, { "user": "juliusvira", "count": 4, "uuid": 31929342 }, { "user": "mchenry", "count": 4, "uuid": 2375622 }, { "user": "joshuaploshay", "count": 3, "uuid": 131921162 }, { "user": "kzarada", "count": 3, "uuid": 31037847 }, { "user": "kyclark", "count": 3, "uuid": 1466468 }, { "user": "kemball", "count": 3, "uuid": 4079687 }, { "user": "sr31bu", "count": 3, "uuid": 106731226 }, { "user": "kutumia", "count": 3, "uuid": 24492860 }, { "user": "mtmarsh2", "count": 3, "uuid": 2382066 }, { "user": "shbhmexe", "count": 2, "uuid": 178397077 }, { "user": "uncleweeds", "count": 2, "uuid": 122569256 }, { "user": "femeunier", "count": 2, "uuid": 8898071 }, { "user": "shreyannandanwar", "count": 2, "uuid": 98053839 }, { "user": "jessicaguo", "count": 2, "uuid": 12022076 }, { "user": "andydawson", "count": 2, "uuid": 3595715 }, { "user": "marissakivi", "count": 1, "uuid": 29230757 }, { "user": "lovelilyinfall", "count": 1, "uuid": 5421381 }, { "user": "kimberlyh66", "count": 1, "uuid": 44081116 }, { "user": "jbowers20", "count": 1, "uuid": 107160695 } ], "_userbio": { "uuid": 2879854, "type": "organization", "name": "PEcAn Project", "followers": 73 }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PEcAnRTM" }, "_devurl": "https://github.com/pecanproject/pecan", "_searchresults": 143, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/PEcAnRTM.html", "extra/readme.html", "extra/readme.md", "LICENSE", "manual.pdf" ], "_cranurl": false, "_exports": [ "burnin.thin", "check.convergence", "default.settings.prospect", "defparam", "dtnorm", "EDR", "EDR.preprocess.history", "fortran_data_module", "foursail", "generalized_plate_model", "generate.noise", "get.EDR.output", "invert_bt", "invert.auto", "invert.custom", "invert.lsq", "is_spectra", "load.from.name", "lognorm.mu", "lognorm.sigma", "matplot", "neff", "params.prospect4", "params.prospect5", "params.prospect5b", "params.prospectd", "params2edr", "print_results_summary", "prior.defaultvals.prospect", "priorfunc.prospect", "pro2s", "pro4sail", "pro4saild", "prospect", "prospect_bt_prior", "resample", "rtnorm", "sensor.list", "sensor.proper", "setup_edr", "spectra", "spectral.response", "summary_mvnorm", "summary_simple", "wavelengths" ], "_datasets": [ { "name": "bandwidth.chrisproba", "title": "", "object": "raw.sensor.data", "file": "raw.sensor.data.RData", "class": [ "data.frame" ], "fields": [ "Band", "Min", "Max", "Mid" ], "rows": 62, "table": true, "tojson": true }, { "name": "dataSpec_prospectd", "title": "", "object": "dataSpec_prospectd", "file": "dataSpec_prospectd.RData", "class": [ "matrix", "array" ], "fields": [ "wavelength", "refractive", "k_cab", "k_car", "k_canth", "k_cbrown", "k_cw", "k_cm" ], "rows": 2101, "table": true, "tojson": true }, { "name": "fwhm.aviris.classic", "title": "", "object": "raw.sensor.data", "file": "raw.sensor.data.RData", "class": [ "data.frame" ], "fields": [ "avg", "fwhm" ], "rows": 224, "table": true, "tojson": true }, { "name": "fwhm.aviris.ng", "title": "", "object": "raw.sensor.data", "file": "raw.sensor.data.RData", "class": [ "data.frame" ], "fields": [ "Wavelength", "fwhm", "unc.wl", "unc.fwhm", "x" ], "rows": 480, "table": true, "tojson": true }, { "name": "fwhm.hyperion", "title": "", "object": "raw.sensor.data", "file": "raw.sensor.data.RData", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "model.list", "title": "", "object": "model.list", "file": "model.list.csv.gz", "class": [ "data.frame" ], "fields": [ "modname", "modcode", "fullname", "par.names", "par.default" ], "rows": 6, "table": true, "tojson": true }, { "name": "rsr.avhrr", "title": "", "object": "raw.sensor.data", "file": "raw.sensor.data.RData", "class": [ "matrix", "array" ], "fields": [ "Wavelength", "AVHRR-1", "AVHRR-2", "AVHRR-3A" ], "rows": 503, "table": true, "tojson": true }, { "name": "rsr.landsat5", "title": "", "object": "raw.sensor.data", "file": "raw.sensor.data.RData", "class": [ "matrix", "array" ], "fields": [ "Wavelength", "L5-1-blue", "L5-2-green", "L5-3-red", "L5-4-nir", "L5-5-swir1", "L5-7-swir2" ], "rows": 914, "table": true, "tojson": true }, { "name": "rsr.landsat7", "title": "", "object": "raw.sensor.data", "file": "raw.sensor.data.RData", "class": [ "matrix", "array" ], "fields": [ "Wavelength", "L7-1-blue", "L7-2-green", "L7-3-red", "L7-4-nir", "L7-5-swir1", "L7-7-swir2" ], "rows": 914, "table": true, "tojson": true }, { "name": "rsr.landsat8", "title": "", "object": "raw.sensor.data", "file": "raw.sensor.data.RData", "class": [ "matrix", "array" ], "fields": [ "Wavelength", "L8-1-aerosol", "L8-2-blue", "L8-3-green", "L8-4-red", "L8-5-nir", "L8-6-swir1", "L8-7-swir2" ], "rows": 825, "table": true, "tojson": true }, { "name": "rsr.modis", "title": "", "object": "raw.sensor.data", "file": "raw.sensor.data.RData", "class": [ "matrix", "array" ], "fields": [ "Wavelength", "RSR_645", "RSR_859", "RSR_469", "RSR_555", "RSR_1240", "RSR_1640", "RSR_2130" ], "rows": 1820, "table": true, "tojson": true }, { "name": "rsr.viirs", "title": "", "object": "raw.sensor.data", "file": "raw.sensor.data.RData", "class": [ "matrix", "array" ], "fields": [ "Wavelength", "RSR_M1", "RSR_M2", "RSR_M3", "RSR_M4", "RSR_M5", "RSR_M6", "RSR_M7", "RSR_M8", "RSR_M10", "RSR_M11" ], "rows": 2500, "table": true, "tojson": true }, { "name": "sensor.rsr", "title": "", "object": "sensor.rsr", "file": "sensor.rsr.RData", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "testspec_ACRU", "title": "", "object": "testspec", "file": "testspec.RData", "class": [ "matrix", "array" ], "fields": [ "AK01_ACRU_B_LC_REFL", "AK01_ACRU_M_LC_REFL", "AK01_ACRU_T_LC_REFL", "AK02_ACRU_M_LC_REFL", "AK02_ACRU_T_LC_REFL", "AK17_ACRU_T_LC_REFL", "AK46_ACRU_M_LC_REFL", "AK46_ACRU_T_LC_REFL", "AK58_ACRU_B_LC_REFL", "AK58_ACRU_M_LC_REFL", "AK58_ACRU_T_LC_REFL", "BH02_ACRU_B_LC_REFL", "BH02_ACRU_M_LC_REFL", "BH02_ACRU_T_LC_REFL", "BH10_ACRU_B_LC_REFL", "BH10_ACRU_M_LC_REFL", "BH10_ACRU_T_LC_REFL", "BH11_ACRU_B_LC_REFL", "BH11_ACRU_M_LC_REFL", "BH12_ACRU_B_LC_REFL", "BH12_ACRU_M_LC_REFL", "BH16_ACRU_B_LC_REFL", "BH16_ACRU_M_LC_REFL", "BH16_ACRU_T_LC_REFL", "BI02_ACRU_B_LC_REFL", "BI02_ACRU_M_LC_REFL", "BI02_ACRU_T_LC_REFL", "BI04_ACRU_B_LC_REFL", "BI04_ACRU_M_LC_REFL", "BI04_ACRU_T_LC_REFL", "BI05_ACRU_B_LC_REFL", "BI05_ACRU_M_LC_REFL", "BI05_ACRU_T_LC_REFL", "BI06_ACRU_B_LC_REFL", "BI06_ACRU_M_LC_REFL", "BI06_ACRU_T_LC_REFL", "DC32_ACRU_B_LC_REFL", "DC00_ACRU_B_LC_REFL", "DC00_ACRU_M_LC_REFL", "DC00_ACRU_T_LC_REFL", "GR08_ACRU_B_LC_REFL", "GR08_ACRU_M_LC_REFL", "IDS10_ACRU_B_LC_REFL", "IDS25_ACRU_B_LC_REFL", "IDS25_ACRU_M_LC_REFL", "IDS25_ACRU_T_LC_REFL", "IDS34_ACRU_B_LC_REFL", "IDS34_ACRU_M_LC_REFL", "IDS34_ACRU_T_LC_REFL", "IDS40_ACRU_B_LC_REFL", "IDS40_ACRU_M_LC_REFL", "IDS40_ACRU_T_LC_REFL", "KM05_ACRU_B_LC_REFL", "KM05_ACRU_M_LC_REFL", "KM05_ACRU_T_LC_REFL", "NC01_ACRU_B_LC_REFL", "NC01_ACRU_M_LC_REFL", "NC01_ACRU_T_LC_REFL", "NC02_ACRU_B_LC_REFL", "NC02_ACRU_M_LC_REFL", "NC02_ACRU_T_LC_REFL", "NC13_ACRU_B_LC_REFL", "NC13_ACRU_M_LC_REFL", "NC13_ACRU_T_LC_REFL", "NC20_ACRU_B_LC_REFL", "NC20_ACRU_M_LC_REFL", "NC20_ACRU_T_LC_REFL", "OF02_ACRU_T_LC_REFL", "OF03_ACRU_B_LC_REFL", "OF03_ACRU_M_LC_REFL", "OF03_ACRU_T_LC_REFL", "PB02_ACRU_M_LC_REFL", "PB02_ACRU_T_LC_REFL", "PB04_ACRU_B_LC_REFL", "PB04_ACRU_T_LC_REFL", "PB12_ACRU_B_LC_REFL", "PB12_ACRU_M_LC_REFL", "PB12_ACRU_T_LC_REFL" ], "rows": 2101, "table": true, "tojson": true } ], "_help": [ { "page": "sub-.spectra", "title": "Select spectra", "topics": [ "[.spectra" ] }, { "page": "sub-sub-.spectra", "title": "Select spectra by wavelength", "topics": [ "[[.spectra" ] }, { "page": "sub-subset-.spectra", "title": "Assign values to spectra by wavelength", "topics": [ "[[<-.spectra" ] }, { "page": "burnin.thin", "title": "Burn-in and thinning of MCMC samples", "topics": [ "burnin.thin" ] }, { "page": "cbind.spectra", "title": "Combine spectra by wavelength", "topics": [ "cbind.spectra" ] }, { "page": "check.convergence", "title": "Check convergence of multiple MCMC chains", "topics": [ "check.convergence" ] }, { "page": "default.settings.prospect", "title": "Defult inversion settings for PROSPECT 5 models", "topics": [ "default.settings.prospect" ] }, { "page": "defparam", "title": "Get default parameters", "topics": [ "defparam" ] }, { "page": "dtnorm", "title": "Truncated normal distribution density", "topics": [ "dtnorm" ] }, { "page": "EDR", "title": "ED radiative transfer module (EDR) wrapper function", "topics": [ "EDR" ] }, { "page": "EDR.preprocess.history", "title": "Preprocess history file for EDR", "topics": [ "EDR.preprocess.history" ] }, { "page": "fortran_data_module", "title": "List to FORTRAN data module", "topics": [ "fortran_data_module" ] }, { "page": "foursail", "title": "SAIL model", "topics": [ "foursail" ] }, { "page": "generalized_plate_model", "title": "Generalized plate model", "topics": [ "generalized_plate_model" ] }, { "page": "generate.noise", "title": "Generate autocorrelated spectral noise", "topics": [ "generate.noise" ] }, { "page": "get.EDR.output", "title": "Read EDR output", "topics": [ "get.EDR.output" ] }, { "page": "invert_bt", "title": "Perform Bayesian inversion using BayesianTools package", "topics": [ "invert_bt" ] }, { "page": "invert.auto", "title": "Inversion with automatic convergence checking", "topics": [ "invert.auto" ] }, { "page": "invert.custom", "title": "Bayesian inversion of a model", "topics": [ "invert.custom" ] }, { "page": "invert.lsq", "title": "Least squares model inversion", "topics": [ "invert.lsq" ] }, { "page": "load.from.name", "title": "Load object from an RData file", "topics": [ "load.from.name" ] }, { "page": "lognorm.mu", "title": "Functions for default priors Lognormal mean parameters", "topics": [ "lognorm.mu" ] }, { "page": "lognorm.sigma", "title": "Lognormal sigma parameter", "topics": [ "lognorm.sigma" ] }, { "page": "matplot", "title": "Matplot generic method", "topics": [ "matplot" ] }, { "page": "matplot.default", "title": "Matplot default method", "topics": [ "matplot.default" ] }, { "page": "matplot.spectra", "title": "Plot multiple spectra on same graph", "topics": [ "matplot.spectra" ] }, { "page": "neff", "title": "Effective sample size", "topics": [ "neff" ] }, { "page": "params.prospect4", "title": "PROSPECT 4 parameters", "topics": [ "params.prospect4" ] }, { "page": "params.prospect5", "title": "PROSPECT 5 parameters", "topics": [ "params.prospect5" ] }, { "page": "params.prospect5b", "title": "PROSPECT 5B parameters", "topics": [ "params.prospect5b" ] }, { "page": "params.prospectd", "title": "PROSPECT D parameters", "topics": [ "params.prospectd" ] }, { "page": "params2edr", "title": "Convert named parameter vector to EDR-compatible inputs", "topics": [ "params2edr" ] }, { "page": "plot.spectra", "title": "Plot spectra vs. wavelength", "topics": [ "plot.spectra" ] }, { "page": "print_results_summary", "title": "Neatly print inversion results summary", "topics": [ "print_results_summary" ] }, { "page": "print.spectra", "title": "Print method for spectra S3 class", "topics": [ "print.spectra" ] }, { "page": "prior.defaultvals.prospect", "title": "Default prior parameters for PROSPECT models", "topics": [ "prior.defaultvals.prospect" ] }, { "page": "priorfunc.prospect", "title": "Default PROSPECT 5 prior function", "topics": [ "priorfunc.prospect" ] }, { "page": "pro2s", "title": "Coupled PROSPECT-Two-stream model", "topics": [ "pro2s" ] }, { "page": "pro4sail", "title": "PRO4SAIL model", "topics": [ "pro4sail" ] }, { "page": "pro4saild", "title": "PRO4SAILD model", "topics": [ "pro4saild" ] }, { "page": "prospect", "title": "PROSPECT (4, 5, or 5B) model", "topics": [ "prospect" ] }, { "page": "prospect_bt_prior", "title": "Quick BayesianTools prior creator for PROSPECT model", "topics": [ "prospect_bt_prior" ] }, { "page": "read.rsr.folder", "title": "Read and process RSR data from directory", "topics": [ "read.rsr.folder" ] }, { "page": "resample", "title": "Resample vector, matrix, or spectra", "topics": [ "resample", "resample.default", "resample.matrix", "resample.spectra" ] }, { "page": "rsr.from.fwhm", "title": "Generate relative spectral response (RSR) matrix based on FWHM data", "topics": [ "rsr.from.fwhm" ] }, { "page": "rtm_loglike", "title": "Generic log-likelihood generator for RTMs", "topics": [ "rtm_loglike" ] }, { "page": "rtnorm", "title": "Random sampling from one-sided truncated normal distribution", "topics": [ "rtnorm" ] }, { "page": "sensor.list", "title": "Sensor spectral response functions", "topics": [ "sensor.list" ] }, { "page": "sensor.proper", "title": "Sensor list with proper names", "topics": [ "sensor.proper" ] }, { "page": "setup_edr", "title": "Setup EDR run", "topics": [ "setup_edr" ] }, { "page": "spectra", "title": "Spectra S3 class", "topics": [ "is_spectra", "spectra" ] }, { "page": "spectral.response", "title": "Convolution of spectra to sensor RSR", "topics": [ "spectral.response" ] }, { "page": "str.spectra", "title": "Structure of 'spectra' object", "topics": [ "str.spectra" ] }, { "page": "summary_mvnorm", "title": "Multivariate normal fit", "topics": [ "summary_mvnorm" ] }, { "page": "summary_simple", "title": "Simple summary statistics on MCMC samples", "topics": [ "summary_simple" ] }, { "page": "trim.rsr", "title": "Trim RSR matrix to wavelength limits", "topics": [ "trim.rsr" ] }, { "page": "wavelengths", "title": "Retrieve wavelengths from spectra object", "topics": [ "wavelengths" ] } ], "_readme": "https://github.com/PecanProject/pecan/raw/HEAD/modules/rtm/README.md", "_rundeps": [ "abind", "alabama", "amerifluxr", "ape", "arrow", "askpass", "assertthat", "base64enc", "BayesianTools", "bigleaf", "bit", "bit64", "bitops", "blob", "boot", "bridgesampling", "Brobdingnag", "bslib", "ca", "cachem", "callr", "cellranger", "class", "classInt", "cli", "clipr", "clue", "cluster", "coda", "codetools", "colorspace", "commonmark", "cpp11", "crayon", "crosstalk", "curl", "data.table", "DBI", "dbplyr", "dendextend", "DEoptimR", "DHARMa", "diagram", "digest", "doParallel", "dplyr", "dtw", "dtwclust", "duckdb", "e1071", "egg", "ellipse", "emulator", "evaluate", "expm", "farver", "fastmap", "flexclust", "fontawesome", "foreach", "fs", "furrr", "future", "future.apply", "gap", "gap.datasets", "gclus", "generics", "geonames", "ggplot2", "ggrepel", "globals", "glue", "gmm", "gridExtra", "gtable", "heatmaply", "here", "highr", "hms", "htmltools", "htmlwidgets", "httpuv", "httr", "httr2", "IDPmisc", "isoband", "iterators", "jquerylib", "jsonlite", "KernSmooth", "knitr", "labeling", "later", "lattice", "lava", "lazyeval", "lifecycle", "listenv", "lme4", "lmtest", "lqmm", "lubridate", "magrittr", "MASS", "Matrix", "MatrixModels", "mcmc", "MCMCpack", "memoise", "mgcv", "mime", "minqa", "mlegp", "modeltools", "MODISTools", "msm", "mvtnorm", "ncdf4", "nleqslv", "nlme", "nloptr", "numbers", "numDeriv", "openssl", "optparse", "otel", "parallelly", "PEcAn.assim.batch", "PEcAn.benchmark", "PEcAn.data.atmosphere", "PEcAn.data.land", "PEcAn.data.remote", "PEcAn.DB", "PEcAn.emulator", "PEcAn.logger", "PEcAn.MA", "PEcAn.priors", "PEcAn.remote", "PEcAn.settings", "PEcAn.uncertainty", "PEcAn.utils", "PEcAn.workflow", "permute", "pillar", "pkgconfig", "plotly", "plyr", "png", "prettyunits", "processx", "prodlim", "progress", "progressr", "promises", "proxy", "ps", "purrr", "qap", "qgam", "qrng", "quantreg", "R.methodsS3", "R.oo", "R.utils", "R6", "randtoolbox", "rappdirs", "raster", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppParallel", "RcppThread", "RcppTOML", "RCurl", "Rdpack", "readr", "readxl", "REddyProc", "reformulas", "registry", "rematch", "reshape2", "reticulate", "rjags", "rjson", "rlang", "rmarkdown", "rngWELL", "robustbase", "rprojroot", "RSpectra", "s2", "S7", "sandwich", "sass", "scales", "sensitivity", "seriation", "sf", "shape", "shiny", "shinyjs", "SimilarityMeasures", "solartime", "sourcetools", "sp", "spacefillr", "SparseGrid", "SparseM", "SQUAREM", "stringi", "stringr", "suntools", "survival", "sys", "terra", "tibble", "tidyr", "tidyselect", "timechange", "tinytex", "tmvtnorm", "triebeard", "TruncatedNormal", "truncnorm", "TSP", "tzdb", "units", "urltools", "utf8", "vctrs", "vegan", "viridis", "viridisLite", "vroom", "webshot", "withr", "wk", "xfun", "XML", "xtable", "xts", "yaml", "zoo" ], "_sysdeps": [ { "shlib": "libmvec", "package": "libc6", "headers": "libc6-dev", "source": "glibc", "version": "2.43-2ubuntu2", "name": "glibc", "homepage": "https://www.gnu.org/software/libc/libc.html", "description": "GNU C Library: Shared libraries" }, { "shlib": "libjags", "package": "jags", "headers": "jags", "source": "jags", "version": "4.3.2-2.2604.0", "name": "jags", "homepage": "https://mcmc-jags.sourceforge.io", "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "pecanrtm.vignette.Rmd", "filename": "pecanrtm.vignette.html", "title": "The PEcAn RTM package", "author": "Alexey Shiklomanov", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Overview of features", "Simulating reflectance", "Inversion" ], "created": "2015-07-06 17:48:32", "modified": "2025-05-25 23:31:54", "commits": 6 } ], "_score": 9.931829465712228, "_indexed": true, "_nocasepkg": "pecanrtm", "_universes": [ "pecanproject" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.9.1.9000", "date": "2026-07-08T01:25:32.000Z", "distro": "resolute", "arch": "aarch64", "commit": "770075d62a06280609933b64a2e08f51e742fc10", "fileid": "https://r2.ropensci.org/b84bd971e422224a326bd92fae756b533dcb0faa7eef99a289f83fb18d7473e1", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/28910349462" }, { "r": "4.7.0", "os": "linux", "version": "1.9.1.9000", "date": "2026-07-08T01:25:16.000Z", "distro": "resolute", "arch": "x86_64", "commit": "770075d62a06280609933b64a2e08f51e742fc10", "fileid": "https://r2.ropensci.org/e88bd6e3d4f5f97e925b710bf18313b27befb8f2227d032a9d9216abdf493580", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/28910349462" }, { "r": "4.6.1", "os": "linux", "version": "1.9.1.9000", "date": "2026-07-08T01:25:57.000Z", "distro": "resolute", "arch": "aarch64", "commit": "770075d62a06280609933b64a2e08f51e742fc10", "fileid": "https://r2.ropensci.org/5d61444e21d0fccdf3922512fef187b43147ec01899145d085ee9df9c5d1319f", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/28910349462" }, { "r": "4.6.1", "os": "linux", "version": "1.9.1.9000", "date": "2026-07-08T01:25:26.000Z", "distro": "resolute", "arch": "x86_64", "commit": "770075d62a06280609933b64a2e08f51e742fc10", "fileid": "https://r2.ropensci.org/492936771d4ec2674e86da0bc6a8dd2b48658cbb297baf384db077cb7ae97727", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/28910349462" }, { "r": "4.5.3", "os": "mac", "version": "1.9.1.9000", "date": "2026-07-08T01:23:43.000Z", "arch": "aarch64", "commit": "770075d62a06280609933b64a2e08f51e742fc10", "fileid": "https://r2.ropensci.org/f84ed8ebe8ec5d73b2157343e33ab9512f44cc99049c5806825a8cb9e6593717", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/28910349462" }, { "r": "4.5.3", "os": "mac", "version": "1.9.1.9000", "date": "2026-07-08T01:24:38.000Z", "arch": "x86_64", "commit": "770075d62a06280609933b64a2e08f51e742fc10", "fileid": "https://r2.ropensci.org/ab786b12c4892784ef25de6465c7a15fce896623ccffe015016827cf7d1daaa4", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/28910349462" }, { "r": "4.6.1", "os": "mac", "version": "1.9.1.9000", "date": "2026-07-08T01:23:29.000Z", "arch": "aarch64", "commit": "770075d62a06280609933b64a2e08f51e742fc10", "fileid": "https://r2.ropensci.org/37ba6cc0209af0817926e82d0c1a846e25c33c90b83ed910f6fdfbab1a9fcab0", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/28910349462" }, { "r": "4.6.1", "os": "mac", "version": "1.9.1.9000", "date": "2026-07-08T01:25:01.000Z", "arch": "x86_64", "commit": "770075d62a06280609933b64a2e08f51e742fc10", "fileid": "https://r2.ropensci.org/22059e77a8a826cbcd7104a3489e80acff56ce847da2e8e7298091bf7ef476c5", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/28910349462" }, { "r": "4.6.0", "os": "wasm", "version": "1.9.1.9000", "date": "2026-07-08T01:25:39.000Z", "arch": "emscripten", "commit": "770075d62a06280609933b64a2e08f51e742fc10", "fileid": "https://r2.ropensci.org/aa2a0b79650da1c744fe2202d078096059856376f5f38f33cc2fbb57a9e1635b", "status": "success", "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/28910349462" } ] }