{
  "_id": "6a22e4a5530b9bc726bcaafe",
  "Package": "PEcAnAssimSequential",
  "Type": "Package",
  "Title": "PEcAn Functions Used for Ecological Forecasts and Reanalysis",
  "Version": "1.10.0.9000",
  "Author": "Mike Dietze",
  "Maintainer": "Mike Dietze <dietze@bu.edu>",
  "Description": "The Predictive Ecosystem Carbon Analyzer (PEcAn) is a\nscientific workflow management tool that is designed to\nsimplify the management of model parameterization, execution,\nand analysis. The goal of PECAn is to streamline the\ninteraction between data and models, and to improve the\nefficacy of scientific investigation.",
  "URL": "https://pecanproject.github.io",
  "BugReports": "https://github.com/PecanProject/pecan/issues",
  "License": "BSD_3_clause + file LICENSE",
  "Copyright": "Authors",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibglpk-dev make libmagick++-dev gsfonts jags libicu-dev\nlibpng-dev libuv1-dev libxml2-dev libnetcdf-dev libssl-dev\nlibproj-dev python3 libsqlite3-dev libudunits2-dev libx11-dev\nxz-utils zlib1g-dev",
  "Repository": "https://pecanproject.r-universe.dev",
  "Date/Publication": "2026-06-05 12:13:58 UTC",
  "RemoteUrl": "https://github.com/PecanProject/pecan",
  "RemoteRef": "HEAD",
  "RemoteSha": "3654c6a1cc83cd02402ca26bd012ed1e111bef1b",
  "RemoteSubdir": "modules/assim.sequential",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-05 14:54:37 UTC",
    "User": "root"
  },
  "MD5sum": "dc268fb3845979734fa3f6b506887704",
  "_user": "pecanproject",
  "_type": "src",
  "_file": "PEcAnAssimSequential_1.10.0.9000.tar.gz",
  "_fileid": "6d6418e23d642ca6852d0d6aa216c3c1fe3032c83cf2b2b7bc8c9daa017683df",
  "_filesize": 2421121,
  "_sha256": "6d6418e23d642ca6852d0d6aa216c3c1fe3032c83cf2b2b7bc8c9daa017683df",
  "_created": "2026-06-05T14:54:37.000Z",
  "_published": "2026-06-05T15:00:53.010Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79753010275,
      "time": 262,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7439725533"
    },
    {
      "job": 79753010429,
      "time": 259,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7439724549"
    },
    {
      "job": 79753010346,
      "time": 136,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7439677993"
    },
    {
      "job": 79753010421,
      "time": 196,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7439700659"
    },
    {
      "job": 79751932154,
      "time": 340,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7439625108"
    },
    {
      "job": 79753010304,
      "time": 224,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7439710908"
    },
    {
      "job": 79753010395,
      "time": 234,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7439714967"
    },
    {
      "job": 79753010422,
      "time": 194,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7439700031"
    },
    {
      "job": 79753010340,
      "time": 162,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7439688238"
    }
  ],
  "_buildurl": "https://github.com/r-universe/pecanproject/actions/runs/27021934168",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/PecanProject/pecan",
  "_commit": {
    "id": "3654c6a1cc83cd02402ca26bd012ed1e111bef1b",
    "author": "Michael Dietze <dietze@bu.edu>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #3978 from omkarrr2533/gsoc/get-trait-data-pft-standalone\n\nfeat(db): extract get_trait_data_pft() as standalone file-I/O-free function\n",
    "time": 1780661638
  },
  "_maintainer": {
    "name": "Mike Dietze",
    "email": "dietze@bu.edu",
    "login": "mdietze",
    "description": "",
    "uuid": 3081466
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "coda",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "furrr",
      "role": "Imports"
    },
    {
      "package": "future",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "lubridate",
      "version": ">= 1.6.0",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "ncdf4",
      "role": "Imports"
    },
    {
      "package": "nimble",
      "role": "Imports"
    },
    {
      "package": "PEcAn.DB",
      "role": "Imports"
    },
    {
      "package": "PEcAn.logger",
      "role": "Imports"
    },
    {
      "package": "PEcAn.remote",
      "role": "Imports"
    },
    {
      "package": "PEcAn.settings",
      "role": "Imports"
    },
    {
      "package": "PEcAn.uncertainty",
      "role": "Imports"
    },
    {
      "package": "PEcAn.workflow",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "reticulate",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "abind",
      "role": "Suggests"
    },
    {
      "package": "corrplot",
      "role": "Suggests"
    },
    {
      "package": "doSNOW",
      "role": "Suggests"
    },
    {
      "package": "exactextractr",
      "role": "Suggests"
    },
    {
      "package": "mvtnorm",
      "role": "Suggests"
    },
    {
      "package": "ggrepel",
      "role": "Suggests"
    },
    {
      "package": "glue",
      "role": "Suggests"
    },
    {
      "package": "ggpubr",
      "role": "Suggests"
    },
    {
      "package": "gridExtra",
      "role": "Suggests"
    },
    {
      "package": "itertools",
      "role": "Suggests"
    },
    {
      "package": "magic",
      "version": ">= 1.5.0",
      "role": "Suggests"
    },
    {
      "package": "methods",
      "role": "Suggests"
    },
    {
      "package": "Metrics",
      "role": "Suggests"
    },
    {
      "package": "PEcAn.benchmark",
      "role": "Suggests"
    },
    {
      "package": "PEcAn.data.land",
      "role": "Suggests"
    },
    {
      "package": "PEcAn.data.remote",
      "role": "Suggests"
    },
    {
      "package": "PEcAn.utils",
      "role": "Suggests"
    },
    {
      "package": "PEcAn.visualization",
      "role": "Suggests"
    },
    {
      "package": "plotrix",
      "role": "Suggests"
    },
    {
      "package": "plyr",
      "version": ">= 1.8.4",
      "role": "Suggests"
    },
    {
      "package": "randomForest",
      "role": "Suggests"
    },
    {
      "package": "keras3",
      "version": ">= 1.0.0",
      "role": "Suggests"
    },
    {
      "package": "raster",
      "role": "Suggests"
    },
    {
      "package": "readr",
      "role": "Suggests"
    },
    {
      "package": "reshape2",
      "version": ">= 1.4.2",
      "role": "Suggests"
    },
    {
      "package": "rlist",
      "role": "Suggests"
    },
    {
      "package": "sf",
      "role": "Suggests"
    },
    {
      "package": "stats",
      "role": "Suggests"
    },
    {
      "package": "terra",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "tictoc",
      "role": "Suggests"
    },
    {
      "package": "tidyr",
      "role": "Suggests"
    },
    {
      "package": "sp",
      "role": "Suggests"
    },
    {
      "package": "utils",
      "role": "Suggests"
    },
    {
      "package": "xgboost",
      "role": "Suggests"
    },
    {
      "package": "XML",
      "role": "Suggests"
    }
  ],
  "_owner": "pecanproject",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-24",
      "n": 1
    },
    {
      "week": "2025-25",
      "n": 2
    },
    {
      "week": "2025-26",
      "n": 4
    },
    {
      "week": "2025-27",
      "n": 2
    },
    {
      "week": "2025-28",
      "n": 6
    },
    {
      "week": "2025-29",
      "n": 9
    },
    {
      "week": "2025-30",
      "n": 3
    },
    {
      "week": "2025-31",
      "n": 2
    },
    {
      "week": "2025-32",
      "n": 6
    },
    {
      "week": "2025-33",
      "n": 7
    },
    {
      "week": "2025-34",
      "n": 1
    },
    {
      "week": "2025-35",
      "n": 8
    },
    {
      "week": "2025-36",
      "n": 7
    },
    {
      "week": "2025-37",
      "n": 1
    },
    {
      "week": "2025-38",
      "n": 2
    },
    {
      "week": "2025-39",
      "n": 4
    },
    {
      "week": "2025-40",
      "n": 7
    },
    {
      "week": "2025-41",
      "n": 5
    },
    {
      "week": "2025-42",
      "n": 8
    },
    {
      "week": "2025-43",
      "n": 7
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2025-45",
      "n": 4
    },
    {
      "week": "2025-46",
      "n": 1
    },
    {
      "week": "2025-47",
      "n": 10
    },
    {
      "week": "2025-48",
      "n": 6
    },
    {
      "week": "2025-49",
      "n": 10
    },
    {
      "week": "2025-50",
      "n": 2
    },
    {
      "week": "2025-51",
      "n": 3
    },
    {
      "week": "2025-52",
      "n": 5
    },
    {
      "week": "2026-01",
      "n": 3
    },
    {
      "week": "2026-02",
      "n": 10
    },
    {
      "week": "2026-03",
      "n": 6
    },
    {
      "week": "2026-04",
      "n": 8
    },
    {
      "week": "2026-05",
      "n": 2
    },
    {
      "week": "2026-06",
      "n": 4
    },
    {
      "week": "2026-07",
      "n": 5
    },
    {
      "week": "2026-08",
      "n": 8
    },
    {
      "week": "2026-09",
      "n": 8
    },
    {
      "week": "2026-10",
      "n": 11
    },
    {
      "week": "2026-11",
      "n": 8
    },
    {
      "week": "2026-12",
      "n": 9
    },
    {
      "week": "2026-13",
      "n": 10
    },
    {
      "week": "2026-14",
      "n": 5
    },
    {
      "week": "2026-15",
      "n": 7
    },
    {
      "week": "2026-16",
      "n": 5
    },
    {
      "week": "2026-17",
      "n": 18
    },
    {
      "week": "2026-18",
      "n": 4
    },
    {
      "week": "2026-19",
      "n": 7
    },
    {
      "week": "2026-20",
      "n": 12
    },
    {
      "week": "2026-21",
      "n": 12
    },
    {
      "week": "2026-22",
      "n": 2
    },
    {
      "week": "2026-23",
      "n": 9
    }
  ],
  "_tags": [
    {
      "name": "v1.10.0",
      "date": "2026-01-06"
    }
  ],
  "_topics": [
    "state-data-assimilation",
    "ensemble-kalman-filter",
    "particle-filter",
    "ecological-forecasting",
    "forecast-verification",
    "bayesian",
    "cyberinfrastructure",
    "data-assimilation",
    "data-science",
    "ecosystem-model",
    "ecosystem-science",
    "forecasting",
    "meta-analysis",
    "national-science-foundation",
    "pecan",
    "plants",
    "jags",
    "cpp"
  ],
  "_stars": 236,
  "_contributors": [
    {
      "user": "mdietze",
      "count": 3197,
      "uuid": 3081466
    },
    {
      "user": "dlebauer",
      "count": 2747,
      "uuid": 464871
    },
    {
      "user": "infotroph",
      "count": 2525,
      "uuid": 1256435
    },
    {
      "user": "ashiklom",
      "count": 1670,
      "uuid": 5680221
    },
    {
      "user": "robkooper",
      "count": 1645,
      "uuid": 1580696
    },
    {
      "user": "istfer",
      "count": 1462,
      "uuid": 13728388
    },
    {
      "user": "tonygardella",
      "count": 1019,
      "uuid": 8570691
    },
    {
      "user": "bcow",
      "count": 712,
      "uuid": 5503595
    },
    {
      "user": "para2x",
      "count": 694,
      "uuid": 7999941
    },
    {
      "user": "aariq",
      "count": 450,
      "uuid": 25404783
    },
    {
      "user": "divine7022",
      "count": 431,
      "uuid": 172599013
    },
    {
      "user": "meetagrawal09",
      "count": 372,
      "uuid": 73902874
    },
    {
      "user": "liamburke24",
      "count": 343,
      "uuid": 29068693
    },
    {
      "user": "araiho",
      "count": 342,
      "uuid": 3520982
    },
    {
      "user": "aritradey-dev",
      "count": 328,
      "uuid": 155592377
    },
    {
      "user": "dongchenz",
      "count": 313,
      "uuid": 82834956
    },
    {
      "user": "bpbond",
      "count": 279,
      "uuid": 1956468
    },
    {
      "user": "moki1202",
      "count": 260,
      "uuid": 73598347
    },
    {
      "user": "ayushprd",
      "count": 238,
      "uuid": 11568631
    },
    {
      "user": "annethomas",
      "count": 228,
      "uuid": 24909306
    },
    {
      "user": "luke-dramko",
      "count": 226,
      "uuid": 38334039
    },
    {
      "user": "nanu1605",
      "count": 218,
      "uuid": 83662210
    },
    {
      "user": "sweetdevil144",
      "count": 182,
      "uuid": 117591942
    },
    {
      "user": "ankurdesai",
      "count": 174,
      "uuid": 3084183
    },
    {
      "user": "henrikajasilta",
      "count": 134,
      "uuid": 92798719
    },
    {
      "user": "tobeycarman",
      "count": 122,
      "uuid": 838735
    },
    {
      "user": "sambhavnoobcoder",
      "count": 115,
      "uuid": 94298612
    },
    {
      "user": "jam2767",
      "count": 106,
      "uuid": 3688280
    },
    {
      "user": "crollinson",
      "count": 99,
      "uuid": 7927379
    },
    {
      "user": "amanskywalker",
      "count": 99,
      "uuid": 11332585
    },
    {
      "user": "tezansahu",
      "count": 96,
      "uuid": 31898274
    },
    {
      "user": "blesson-07",
      "count": 88,
      "uuid": 169597508
    },
    {
      "user": "mukulmaheshwari",
      "count": 79,
      "uuid": 31155543
    },
    {
      "user": "apourmok",
      "count": 77,
      "uuid": 5833759
    },
    {
      "user": "rahul799",
      "count": 63,
      "uuid": 41531498
    },
    {
      "user": "abbylewis",
      "count": 60,
      "uuid": 51751937
    },
    {
      "user": "s1ddhey",
      "count": 58,
      "uuid": 141068820
    },
    {
      "user": "sl4397",
      "count": 57,
      "uuid": 47115446
    },
    {
      "user": "mccabete",
      "count": 57,
      "uuid": 21266199
    },
    {
      "user": "man080107",
      "count": 54,
      "uuid": 193199761
    },
    {
      "user": "anshul23102",
      "count": 49,
      "uuid": 167362756
    },
    {
      "user": "yinghaosunn",
      "count": 47,
      "uuid": 177382441
    },
    {
      "user": "snafkin547",
      "count": 46,
      "uuid": 62607343
    },
    {
      "user": "shubhamagarwal92",
      "count": 44,
      "uuid": 7984532
    },
    {
      "user": "hardimanb",
      "count": 43,
      "uuid": 3246925
    },
    {
      "user": "kristinariemer",
      "count": 41,
      "uuid": 6686508
    },
    {
      "user": "mdekauwe",
      "count": 41,
      "uuid": 278045
    },
    {
      "user": "ch1eroe1",
      "count": 39,
      "uuid": 12739945
    },
    {
      "user": "bailsofhay",
      "count": 31,
      "uuid": 34662202
    },
    {
      "user": "omkarrr2533",
      "count": 30,
      "uuid": 201979858
    },
    {
      "user": "allgandalf",
      "count": 27,
      "uuid": 110545952
    },
    {
      "user": "harshagr70",
      "count": 17,
      "uuid": 73224301
    },
    {
      "user": "chaneyfink",
      "count": 17,
      "uuid": 149990854
    },
    {
      "user": "its-maniaco",
      "count": 16,
      "uuid": 21123621
    },
    {
      "user": "kragosta",
      "count": 14,
      "uuid": 29147491
    },
    {
      "user": "tonycohen",
      "count": 13,
      "uuid": 3101971
    },
    {
      "user": "magicforrest",
      "count": 13,
      "uuid": 6500068
    },
    {
      "user": "clarissecheung",
      "count": 12,
      "uuid": 94148940
    },
    {
      "user": "zhangwenx",
      "count": 12,
      "uuid": 9668009
    },
    {
      "user": "sarahkanee",
      "count": 12,
      "uuid": 106052715
    },
    {
      "user": "chris-schnaufer",
      "count": 12,
      "uuid": 45463434
    },
    {
      "user": "yan130",
      "count": 10,
      "uuid": 4979985
    },
    {
      "user": "koolgax99",
      "count": 10,
      "uuid": 55532999
    },
    {
      "user": "chaitanyachavali",
      "count": 9,
      "uuid": 13823292
    },
    {
      "user": "thomas-sedhom",
      "count": 9,
      "uuid": 147952292
    },
    {
      "user": "qianyuxuan",
      "count": 8,
      "uuid": 21245183
    },
    {
      "user": "arob5",
      "count": 7,
      "uuid": 30061879
    },
    {
      "user": "qdbell",
      "count": 7,
      "uuid": 5080358
    },
    {
      "user": "sbs2019",
      "count": 6,
      "uuid": 15755183
    },
    {
      "user": "akash-paluvai",
      "count": 6,
      "uuid": 144153704
    },
    {
      "user": "hhh-hyc",
      "count": 6,
      "uuid": 75413280
    },
    {
      "user": "bjarneh22",
      "count": 5,
      "uuid": 80625035
    },
    {
      "user": "hangyakuzero",
      "count": 5,
      "uuid": 46108879
    },
    {
      "user": "katherineanne21",
      "count": 5,
      "uuid": 157232885
    },
    {
      "user": "jingxia",
      "count": 5,
      "uuid": 3708910
    },
    {
      "user": "mchenry",
      "count": 4,
      "uuid": 2375622
    },
    {
      "user": "juliusvira",
      "count": 4,
      "uuid": 31929342
    },
    {
      "user": "djaiswal",
      "count": 4,
      "uuid": 6233112
    },
    {
      "user": "krishnashuk",
      "count": 4,
      "uuid": 174427186
    },
    {
      "user": "mtmarsh2",
      "count": 3,
      "uuid": 2382066
    },
    {
      "user": "kutumia",
      "count": 3,
      "uuid": 24492860
    },
    {
      "user": "sr31bu",
      "count": 3,
      "uuid": 106731226
    },
    {
      "user": "kyclark",
      "count": 3,
      "uuid": 1466468
    },
    {
      "user": "kzarada",
      "count": 3,
      "uuid": 31037847
    },
    {
      "user": "joshuaploshay",
      "count": 3,
      "uuid": 131921162
    },
    {
      "user": "kemball",
      "count": 3,
      "uuid": 4079687
    },
    {
      "user": "shbhmexe",
      "count": 2,
      "uuid": 178397077
    },
    {
      "user": "ayushman1210",
      "count": 2,
      "uuid": 138183570
    },
    {
      "user": "uncleweeds",
      "count": 2,
      "uuid": 122569256
    },
    {
      "user": "femeunier",
      "count": 2,
      "uuid": 8898071
    },
    {
      "user": "shreyannandanwar",
      "count": 2,
      "uuid": 98053839
    },
    {
      "user": "jessicaguo",
      "count": 2,
      "uuid": 12022076
    },
    {
      "user": "andydawson",
      "count": 2,
      "uuid": 3595715
    },
    {
      "user": "marissakivi",
      "count": 1,
      "uuid": 29230757
    },
    {
      "user": "lovelilyinfall",
      "count": 1,
      "uuid": 5421381
    },
    {
      "user": "kimberlyh66",
      "count": 1,
      "uuid": 44081116
    },
    {
      "user": "jbowers20",
      "count": 1,
      "uuid": 107160695
    },
    {
      "user": "hmb1",
      "count": 1,
      "uuid": 6428656
    }
  ],
  "_userbio": {
    "uuid": 2879854,
    "type": "organization",
    "name": "PEcAn Project"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PEcAnAssimSequential"
  },
  "_devurl": "https://github.com/pecanproject/pecan",
  "_searchresults": 49,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/PEcAnAssimSequential.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "adj.ens",
    "aggregate",
    "alltocs",
    "alr",
    "Analysis.sda",
    "assessParams",
    "block_matrix",
    "conj_wt_wishart_sampler",
    "Construct_H",
    "construct_nimble_H",
    "Construct.H.multisite",
    "Construct.R",
    "Contruct.Pf",
    "Create_Site_PFT_CSV",
    "downscale_qsub_main",
    "dwtmnorm",
    "EnKF",
    "EnKF.MultiSite",
    "GEF",
    "GEF.MultiSite",
    "GEF.MultiSite.Nimble",
    "get_ensemble_weights",
    "GrabFillMatrix",
    "hop_test",
    "interactive.plotting.sda",
    "inv.alr",
    "load_data_paleon_sda",
    "Local.support",
    "matrix_network",
    "metSplit",
    "obs_timestep2timepoint",
    "Obs.data.prepare.MultiSite",
    "outlier.detector.boxplot",
    "piecew.poly.local",
    "post.analysis.ggplot",
    "post.analysis.ggplot.violin",
    "post.analysis.multisite.ggplot",
    "postana.bias.plotting.sda",
    "postana.bias.plotting.sda.corr",
    "postana.timeser.plotting.sda",
    "Prep_OBS_SDA",
    "qsub_sda",
    "qsub_sda_batch",
    "Remote_Sync_launcher",
    "rescaling_stateVars",
    "rwtmnorm",
    "sample_met",
    "sampler_toggle",
    "sda_assemble",
    "SDA_control",
    "SDA_downscale_hrly",
    "SDA_OBS_Assembler",
    "SDA_remote_launcher",
    "SDA_timeseries_plot",
    "sda_weights_site",
    "sda.enkf",
    "sda.enkf_local",
    "sda.enkf.multisite",
    "sda.enkf.original",
    "sda.qsub.job.submission",
    "simple.local",
    "stack_covariates_2_geotiff",
    "tobit_model_censored",
    "tobit.model",
    "tobit2space.model",
    "y_star_create"
  ],
  "_help": [
    {
      "page": "adj.ens",
      "title": "adj.ens",
      "topics": [
        "adj.ens"
      ]
    },
    {
      "page": "aggregate",
      "title": "Aggregation Function",
      "topics": [
        "aggregate"
      ]
    },
    {
      "page": "alltocs",
      "title": "alltocs",
      "topics": [
        "alltocs"
      ]
    },
    {
      "page": "alr",
      "title": "Additive Log Ratio transform",
      "topics": [
        "alr"
      ]
    },
    {
      "page": "analysis_sda_block",
      "title": "analysis_sda_block",
      "topics": [
        "analysis_sda_block"
      ]
    },
    {
      "page": "Analysis.sda",
      "title": "Analysis.sda",
      "topics": [
        "Analysis.sda"
      ]
    },
    {
      "page": "assess.params",
      "title": "assess.params",
      "topics": [
        "assess.params",
        "assessParams"
      ]
    },
    {
      "page": "block_matrix",
      "title": "block_matrix",
      "topics": [
        "block_matrix"
      ]
    },
    {
      "page": "block.2.vector",
      "title": "block.2.vector",
      "topics": [
        "block.2.vector"
      ]
    },
    {
      "page": "build_X",
      "title": "build_X",
      "topics": [
        "build_X"
      ]
    },
    {
      "page": "build.block.xy",
      "title": "build.block.xy",
      "topics": [
        "build.block.xy"
      ]
    },
    {
      "page": "check.qsub.job.info",
      "title": "sda_assemble",
      "topics": [
        "check.qsub.job.info"
      ]
    },
    {
      "page": "conj_wt_wishart_sampler",
      "title": "Weighted conjugate wishart",
      "topics": [
        "conj_wt_wishart_sampler"
      ]
    },
    {
      "page": "Construc_H",
      "title": "Construc_H",
      "topics": [
        "Construct_H",
        "Construc_H"
      ]
    },
    {
      "page": "construct_nimble_H",
      "title": "construct_nimble_H",
      "topics": [
        "construct_nimble_H"
      ]
    },
    {
      "page": "Construct.H.multisite",
      "title": "Construct.H.multisite",
      "topics": [
        "Construct.H.multisite"
      ]
    },
    {
      "page": "Construct.R",
      "title": "Construct.R",
      "topics": [
        "Construct.R"
      ]
    },
    {
      "page": "Contruct.Pf",
      "title": "Contruct.Pf",
      "topics": [
        "Contruct.Pf"
      ]
    },
    {
      "page": "Create_Site_PFT_CSV",
      "title": "Title Identify pft for each site of a multi-site settings using NLCD and Eco-region",
      "topics": [
        "Create_Site_PFT_CSV"
      ]
    },
    {
      "page": "debias.average",
      "title": "debias.average",
      "topics": [
        "debias.average"
      ]
    },
    {
      "page": "debias.extract.cov",
      "title": "debias.extract.cov",
      "topics": [
        "debias.extract.cov"
      ]
    },
    {
      "page": "debias.map.products",
      "title": "debias.map.products",
      "topics": [
        "debias.map.products"
      ]
    },
    {
      "page": "debias.ML",
      "title": "sda.bias.correction",
      "topics": [
        "debias.ML"
      ]
    },
    {
      "page": "debias.res.lag.calc",
      "title": "debias.res.lag.calc",
      "topics": [
        "debias.res.lag.calc"
      ]
    },
    {
      "page": "debias.residual.calc",
      "title": "debias.residual.calc",
      "topics": [
        "debias.residual.calc"
      ]
    },
    {
      "page": "debias.train.accuracy",
      "title": "debias.train.accuracy",
      "topics": [
        "debias.train.accuracy"
      ]
    },
    {
      "page": "downscale_main",
      "title": "downscale_main",
      "topics": [
        "downscale_main"
      ]
    },
    {
      "page": "downscale_qsub_main",
      "title": "downscale_qsub_main",
      "topics": [
        "downscale_qsub_main"
      ]
    },
    {
      "page": "dwtmnorm",
      "title": "weighted multivariate normal density",
      "topics": [
        "dwtmnorm"
      ]
    },
    {
      "page": "EnKF",
      "title": "EnKF",
      "topics": [
        "EnKF"
      ]
    },
    {
      "page": "EnKF.MultiSite",
      "title": "EnKF.MultiSite",
      "topics": [
        "EnKF.MultiSite"
      ]
    },
    {
      "page": "GEF",
      "title": "GEF",
      "topics": [
        "GEF",
        "GEF.MultiSite"
      ]
    },
    {
      "page": "GEF.MultiSite.Nimble",
      "title": "multisite TWEnF",
      "topics": [
        "GEF.MultiSite.Nimble"
      ]
    },
    {
      "page": "get_ensemble_weights",
      "title": "get_ensemble_weights",
      "topics": [
        "get_ensemble_weights"
      ]
    },
    {
      "page": "GrabFillMatrix",
      "title": "GrabFillMatrix",
      "topics": [
        "GrabFillMatrix"
      ]
    },
    {
      "page": "hop_test",
      "title": "hop_test",
      "topics": [
        "hop_test"
      ]
    },
    {
      "page": "interactive.plotting.sda",
      "title": "Internal functions for plotting SDA outputs. Interactive, post analysis time-series and bias plots in base plotting system and ggplot",
      "topics": [
        "interactive.plotting.sda",
        "post.analysis.ggplot",
        "post.analysis.ggplot.violin",
        "post.analysis.multisite.ggplot",
        "postana.bias.plotting.sda",
        "postana.bias.plotting.sda.corr",
        "postana.timeser.plotting.sda",
        "SDA_timeseries_plot"
      ]
    },
    {
      "page": "inv.alr",
      "title": "inverse of ALR transform",
      "topics": [
        "inv.alr"
      ]
    },
    {
      "page": "load_data_paleon_sda",
      "title": "load_data_paleon_sda",
      "topics": [
        "load_data_paleon_sda"
      ]
    },
    {
      "page": "load_nimble",
      "title": "load_nimble",
      "topics": [
        "load_nimble",
        "y_star_create"
      ]
    },
    {
      "page": "Local.support",
      "title": "Local.support",
      "topics": [
        "Local.support"
      ]
    },
    {
      "page": "matrix_network",
      "title": "matrix_network",
      "topics": [
        "matrix_network"
      ]
    },
    {
      "page": "MCMC_block_function",
      "title": "MCMC_block_function",
      "topics": [
        "MCMC_block_function"
      ]
    },
    {
      "page": "MCMC_function",
      "title": "MCMC_function",
      "topics": [
        "MCMC_function"
      ]
    },
    {
      "page": "MCMC_Init",
      "title": "MCMC_Init",
      "topics": [
        "MCMC_Init"
      ]
    },
    {
      "page": "metSplit",
      "title": "metSplit",
      "topics": [
        "metSplit"
      ]
    },
    {
      "page": "obs_timestep2timepoint",
      "title": "convert from timestep to actual time points. supports year, month, week, and day as time unit.",
      "topics": [
        "obs_timestep2timepoint"
      ]
    },
    {
      "page": "Obs.data.prepare.MultiSite",
      "title": "Obs.data.prepare.MultiSite",
      "topics": [
        "Obs.data.prepare.MultiSite"
      ]
    },
    {
      "page": "outlier.detector.boxplot",
      "title": "outlier.detector.boxplot",
      "topics": [
        "outlier.detector.boxplot"
      ]
    },
    {
      "page": "parallel_prediction",
      "title": "parallel_prediction",
      "topics": [
        "parallel_prediction"
      ]
    },
    {
      "page": "parallel_train",
      "title": "parallel_train",
      "topics": [
        "parallel_train"
      ]
    },
    {
      "page": "pecan_settings_2_pts",
      "title": "pecan_settings_2_pts",
      "topics": [
        "pecan_settings_2_pts"
      ]
    },
    {
      "page": "piecew.poly.local",
      "title": "piecew.poly.local",
      "topics": [
        "piecew.poly.local"
      ]
    },
    {
      "page": "Prep_OBS_SDA",
      "title": "SDA observation preparation function for LAI and AGB",
      "topics": [
        "Prep_OBS_SDA"
      ]
    },
    {
      "page": "prepare_train_dat",
      "title": "prepare_train_dat",
      "topics": [
        "prepare_train_dat"
      ]
    },
    {
      "page": "qsub_sda",
      "title": "qsub_sda",
      "topics": [
        "qsub_sda"
      ]
    },
    {
      "page": "qsub_sda_batch",
      "title": "qsub_sda_batch",
      "topics": [
        "qsub_sda_batch"
      ]
    },
    {
      "page": "Remote_Sync_launcher",
      "title": "Remote_Sync_launcher",
      "topics": [
        "Remote_Sync_launcher"
      ]
    },
    {
      "page": "rescaling_stateVars",
      "title": "rescaling_stateVars",
      "topics": [
        "rescaling_stateVars"
      ]
    },
    {
      "page": "rwtmnorm",
      "title": "random weighted multivariate normal",
      "topics": [
        "rwtmnorm"
      ]
    },
    {
      "page": "sample_met",
      "title": "Sample meteorological ensembles",
      "topics": [
        "sample_met"
      ]
    },
    {
      "page": "sample.parameters",
      "title": "sample parameters",
      "topics": [
        "sample.parameters"
      ]
    },
    {
      "page": "sampler_toggle",
      "title": "sampler toggling",
      "topics": [
        "sampler_toggle"
      ]
    },
    {
      "page": "sda_assemble",
      "title": "sda_assemble",
      "topics": [
        "sda_assemble"
      ]
    },
    {
      "page": "SDA_control",
      "title": "SDA_control",
      "topics": [
        "SDA_control"
      ]
    },
    {
      "page": "SDA_downscale",
      "title": "SDA Downscale Function",
      "topics": [
        "SDA_downscale"
      ]
    },
    {
      "page": "SDA_downscale_hrly",
      "title": "SDA　Downscale Function for Hourly Data",
      "topics": [
        "SDA_downscale_hrly"
      ]
    },
    {
      "page": "SDA_downscale_metrics",
      "title": "Calculate Metrics for Downscaling Results",
      "topics": [
        "SDA_downscale_metrics"
      ]
    },
    {
      "page": "SDA_downscale_preprocess",
      "title": "Preprocess Data for Downscaling",
      "topics": [
        "SDA_downscale_preprocess"
      ]
    },
    {
      "page": "sda_matchparam",
      "title": "sda_matchparam",
      "topics": [
        "sda_matchparam"
      ]
    },
    {
      "page": "SDA_OBS_Assembler",
      "title": "Assembler for preparing obs.mean and obs.cov for the SDA workflow",
      "topics": [
        "SDA_OBS_Assembler"
      ]
    },
    {
      "page": "SDA_remote_launcher",
      "title": "SDA_remote_launcher",
      "topics": [
        "SDA_remote_launcher"
      ]
    },
    {
      "page": "sda_weights_site",
      "title": "Calculate ensemble weights for each site at time t.",
      "topics": [
        "sda_weights_site"
      ]
    },
    {
      "page": "sda.bias.correction",
      "title": "sda.bias.correction",
      "topics": [
        "sda.bias.correction"
      ]
    },
    {
      "page": "sda.enkf",
      "title": "State Variable Data Assimilation: Ensemble Kalman Filter and Generalized ensemble filter",
      "topics": [
        "sda.enkf"
      ]
    },
    {
      "page": "sda.enkf_local",
      "title": "sda.enkf_local",
      "topics": [
        "sda.enkf_local"
      ]
    },
    {
      "page": "sda.enkf.multisite",
      "title": "State Variable Data Assimilation: Ensemble Kalman Filter and Generalized ensemble filter",
      "topics": [
        "sda.enkf.multisite"
      ]
    },
    {
      "page": "sda.enkf.original",
      "title": "State Variable Data Assimilation: Ensemble Kalman Filter",
      "topics": [
        "sda.enkf.original"
      ]
    },
    {
      "page": "sda.qsub.job.submission",
      "title": "sda_assemble",
      "topics": [
        "sda.qsub.job.submission"
      ]
    },
    {
      "page": "simple.local",
      "title": "simple.local",
      "topics": [
        "simple.local"
      ]
    },
    {
      "page": "stack_covariates_2_df",
      "title": "stack_covariates_2_df",
      "topics": [
        "stack_covariates_2_df"
      ]
    },
    {
      "page": "stack_covariates_2_geotiff",
      "title": "stack_covariates_2_geotiff",
      "topics": [
        "stack_covariates_2_geotiff"
      ]
    },
    {
      "page": "tobit_model_censored",
      "title": "tobit_model_censored",
      "topics": [
        "tobit_model_censored"
      ]
    },
    {
      "page": "tobit.model",
      "title": "TWEnF",
      "topics": [
        "tobit.model"
      ]
    },
    {
      "page": "tobit2space.model",
      "title": "Fit tobit prior to ensemble members",
      "topics": [
        "tobit2space.model"
      ]
    },
    {
      "page": "update_q",
      "title": "update_q",
      "topics": [
        "update_q"
      ]
    }
  ],
  "_readme": "https://github.com/PecanProject/pecan/raw/HEAD/modules/assim.sequential/README.md",
  "_rundeps": [
    "abind",
    "amerifluxr",
    "arrow",
    "askpass",
    "assertthat",
    "base64enc",
    "bigleaf",
    "bit",
    "bit64",
    "bitops",
    "blob",
    "boot",
    "bslib",
    "ca",
    "cachem",
    "callr",
    "cellranger",
    "class",
    "classInt",
    "cli",
    "clipr",
    "clue",
    "cluster",
    "coda",
    "codetools",
    "colorspace",
    "commonmark",
    "cpp11",
    "crayon",
    "crosstalk",
    "curl",
    "data.table",
    "DBI",
    "dbplyr",
    "dendextend",
    "DEoptimR",
    "digest",
    "doParallel",
    "dplyr",
    "dtw",
    "dtwclust",
    "duckdb",
    "e1071",
    "egg",
    "evaluate",
    "farver",
    "fastmap",
    "flexclust",
    "fontawesome",
    "foreach",
    "fs",
    "furrr",
    "future",
    "gclus",
    "generics",
    "geonames",
    "ggplot2",
    "ggrepel",
    "globals",
    "glue",
    "gridExtra",
    "gtable",
    "heatmaply",
    "here",
    "highr",
    "hms",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "httr",
    "httr2",
    "igraph",
    "isoband",
    "iterators",
    "jquerylib",
    "jsonlite",
    "KernSmooth",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "listenv",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixModels",
    "mcmc",
    "MCMCpack",
    "memoise",
    "mgcv",
    "mime",
    "mlegp",
    "modeltools",
    "MODISTools",
    "mvtnorm",
    "ncdf4",
    "nimble",
    "nlme",
    "numbers",
    "numDeriv",
    "openssl",
    "optparse",
    "otel",
    "parallelly",
    "PEcAn.data.atmosphere",
    "PEcAn.data.land",
    "PEcAn.data.remote",
    "PEcAn.DB",
    "PEcAn.emulator",
    "PEcAn.logger",
    "PEcAn.MA",
    "PEcAn.priors",
    "PEcAn.remote",
    "PEcAn.settings",
    "PEcAn.uncertainty",
    "PEcAn.utils",
    "PEcAn.workflow",
    "permute",
    "pillar",
    "pkgconfig",
    "plotly",
    "plyr",
    "png",
    "pracma",
    "prettyunits",
    "processx",
    "progress",
    "promises",
    "proxy",
    "ps",
    "purrr",
    "qap",
    "quantreg",
    "R.methodsS3",
    "R.oo",
    "R.utils",
    "R6",
    "randtoolbox",
    "rappdirs",
    "raster",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "RcppParallel",
    "RcppThread",
    "RcppTOML",
    "RCurl",
    "readr",
    "readxl",
    "REddyProc",
    "registry",
    "rematch",
    "reshape2",
    "reticulate",
    "rjags",
    "rjson",
    "rlang",
    "rmarkdown",
    "rngWELL",
    "robustbase",
    "rprojroot",
    "RSpectra",
    "s2",
    "S7",
    "sass",
    "scales",
    "sensitivity",
    "seriation",
    "sf",
    "shiny",
    "shinyjs",
    "solartime",
    "sourcetools",
    "sp",
    "SparseM",
    "stringi",
    "stringr",
    "suntools",
    "survival",
    "sys",
    "terra",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "tinytex",
    "triebeard",
    "truncnorm",
    "TSP",
    "tzdb",
    "units",
    "urltools",
    "utf8",
    "vctrs",
    "vegan",
    "viridis",
    "viridisLite",
    "vroom",
    "webshot",
    "withr",
    "wk",
    "xfun",
    "XML",
    "xtable",
    "xts",
    "yaml",
    "zoo"
  ],
  "_sysdeps": [
    {
      "shlib": "libjags",
      "package": "jags",
      "headers": "jags",
      "source": "jags",
      "version": "4.3.2-2.2404.0",
      "name": "jags",
      "homepage": "https://mcmc-jags.sourceforge.io",
      "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary\nJAGS is Just Another Gibbs Sampler.  It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary."
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 8.464853165235683,
  "_indexed": true,
  "_nocasepkg": "pecanassimsequential",
  "_universes": [
    "pecanproject",
    "mdietze"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.10.0.9000",
      "date": "2026-06-05T14:59:04.000Z",
      "distro": "noble",
      "commit": "3654c6a1cc83cd02402ca26bd012ed1e111bef1b",
      "fileid": "31cc1e7f8b13fb4132338deedca68db104ed0ee5324f4727fd4bd752521edbea",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/27021934168"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.10.0.9000",
      "date": "2026-06-05T14:59:00.000Z",
      "distro": "noble",
      "commit": "3654c6a1cc83cd02402ca26bd012ed1e111bef1b",
      "fileid": "08316d36735cadaa3bba588b4cf4c585df72d6447fa48e0a2421a9f6233999a6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/27021934168"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.10.0.9000",
      "date": "2026-06-05T14:57:15.000Z",
      "commit": "3654c6a1cc83cd02402ca26bd012ed1e111bef1b",
      "fileid": "13a05f6e4c4457e1b344d144bc2bdfb1dcb3e973e63629e8f1e68bc3f3455dbc",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/27021934168"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.10.0.9000",
      "date": "2026-06-05T14:57:54.000Z",
      "commit": "3654c6a1cc83cd02402ca26bd012ed1e111bef1b",
      "fileid": "a1cc7620edfddebd070babdab962694449d875d256a1ba010803407caeedebd4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/27021934168"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.10.0.9000",
      "date": "2026-06-05T14:59:23.000Z",
      "commit": "3654c6a1cc83cd02402ca26bd012ed1e111bef1b",
      "fileid": "6f24c4441c7e36eebc9a831085e1e1f60219b72f8f87dddb2457550e1bdb599d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/27021934168"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.10.0.9000",
      "date": "2026-06-05T14:58:24.000Z",
      "commit": "3654c6a1cc83cd02402ca26bd012ed1e111bef1b",
      "fileid": "9cf0cdf5006de6083c8ad2ffe3790e498beee59d382b6858dab2d9eadda0c86b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/27021934168"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.10.0.9000",
      "date": "2026-06-05T14:57:45.000Z",
      "commit": "3654c6a1cc83cd02402ca26bd012ed1e111bef1b",
      "fileid": "796e892f19d03b97dd5de025dd3014d3fcff237c163d1c8971fce7cd80fdf5b3",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/27021934168"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.10.0.9000",
      "date": "2026-06-05T14:57:15.000Z",
      "commit": "3654c6a1cc83cd02402ca26bd012ed1e111bef1b",
      "fileid": "079bb049fcadef597b0992f650e7dd954fc41653e64c2a158466eb4a17c169ed",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/pecanproject/actions/runs/27021934168"
    }
  ]
}