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        "hour",
        "SolarR",
        "Temp",
        "RH",
        "WS",
        "precip"
      ],
      "rows": 43848,
      "table": true,
      "tojson": true
    },
    {
      "name": "warm",
      "title": "",
      "object": "warm",
      "file": "warm.RData",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "WD1979",
      "title": "Randomly picked dataset from the Illinois area from 1979",
      "object": "WD1979",
      "file": "WD1979.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "year",
        "month",
        "day",
        "JD",
        "maxTemp",
        "minTemp",
        "SolarR",
        "PotEv",
        "precip"
      ],
      "rows": 365,
      "table": true,
      "tojson": true
    },
    {
      "name": "weather04",
      "title": "Weather data",
      "object": "weather04",
      "file": "weather04.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "year",
        "doy",
        "hour",
        "solarR",
        "DailyTemp.C",
        "RH",
        "WindSpeed",
        "precip"
      ],
      "rows": 8760,
      "table": true,
      "tojson": true
    },
    {
      "name": "weather05",
      "title": "Weather data",
      "object": "weather05",
      "file": "weather05.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "year",
        "doy",
        "hour",
        "solarR",
        "DailyTemp.C",
        "RH",
        "WindSpeed",
        "precip"
      ],
      "rows": 8760,
      "table": true,
      "tojson": true
    },
    {
      "name": "weather06",
      "title": "Weather data",
      "object": "weather06",
      "file": "weather06.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "year",
        "doy",
        "hour",
        "SolarR",
        "Temp",
        "RH",
        "WS",
        "precip"
      ],
      "rows": 8760,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "aci",
      "title": "A/Ci curves",
      "topics": [
        "aci"
      ]
    },
    {
      "page": "annualDB",
      "title": "Miscanthus dry biomass data.",
      "topics": [
        "annualDB",
        "annualDB2"
      ]
    },
    {
      "page": "aq",
      "title": "A/Q curves",
      "topics": [
        "aq"
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    },
    {
      "page": "BioCro",
      "title": "BioCro",
      "topics": [
        "BioCro"
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    },
    {
      "page": "BioGro",
      "title": "Biomass crops growth simulation",
      "topics": [
        "BioGro",
        "canopyParms",
        "centuryParms",
        "nitroParms",
        "phenoParms",
        "photoParms",
        "print.BioGro",
        "seneParms",
        "showSoilType",
        "soilParms",
        "SoilType"
      ]
    },
    {
      "page": "c3CanA",
      "title": "Simulates canopy assimilation for C3 canopies",
      "topics": [
        "c3CanA"
      ]
    },
    {
      "page": "c3photo",
      "title": "Simulates C3 photosynthesis",
      "topics": [
        "c3photo"
      ]
    },
    {
      "page": "c4photo",
      "title": "Coupled photosynthesis-stomatal conductance simulation",
      "topics": [
        "c4photo"
      ]
    },
    {
      "page": "CanA",
      "title": "Simulates canopy assimilation",
      "topics": [
        "CanA",
        "lnParms"
      ]
    },
    {
      "page": "Century",
      "title": "This function implements the Century model from Parton.",
      "topics": [
        "Century",
        "CenturyC"
      ]
    },
    {
      "page": "CheckLeapYear",
      "title": "This fuction checks if year is a leap year. If yes, then returns 1 or 0.",
      "topics": [
        "CheckLeapYear"
      ]
    },
    {
      "page": "cmi0506",
      "title": "Weather data",
      "topics": [
        "cmi0506"
      ]
    },
    {
      "page": "cmiWet",
      "title": "Weather data",
      "topics": [
        "cmiWet"
      ]
    },
    {
      "page": "CropGro",
      "title": "Biomass crops growth simulation",
      "topics": [
        "BioGro",
        "canopyParms",
        "centuryParms",
        "CropGro",
        "nitroParms",
        "phenoParms",
        "photoParms",
        "print.BioGro",
        "seneParms",
        "showSoilType",
        "soilParms",
        "SoilType"
      ]
    },
    {
      "page": "doy124",
      "title": "Weather data",
      "topics": [
        "doy124"
      ]
    },
    {
      "page": "eC4photo",
      "title": "C4 photosynthesis simulation (von Caemmerer model)",
      "topics": [
        "eC4photo"
      ]
    },
    {
      "page": "eCanA",
      "title": "Simulates canopy assimilation (von Caemmerer model)",
      "topics": [
        "eCanA"
      ]
    },
    {
      "page": "EngWea94i",
      "title": "Weather data corresponding to a paper by Clive Beale (see source).",
      "topics": [
        "EngWea94i"
      ]
    },
    {
      "page": "EngWea94rf",
      "title": "Weather data corresponding to a paper by Clive Beale (see source).",
      "topics": [
        "EngWea94rf"
      ]
    },
    {
      "page": "idbp",
      "title": "Initial Dry Biomass Partitioning Coefficients",
      "topics": [
        "idbp"
      ]
    },
    {
      "page": "idbpm",
      "title": "idpm",
      "topics": [
        "idbpm"
      ]
    },
    {
      "page": "LayET",
      "title": "Weather data",
      "topics": [
        "LayET"
      ]
    },
    {
      "page": "lightME",
      "title": "Simulates the light macro environment",
      "topics": [
        "lightME"
      ]
    },
    {
      "page": "MaizeGro",
      "title": "Simulation of Maize, Growth, LAI, Photosynthesis and phenology",
      "topics": [
        "MaizeGro"
      ]
    },
    {
      "page": "MaizePhenoParms",
      "title": "Lists values for phenology parameters",
      "topics": [
        "MaizePhenoParms"
      ]
    },
    {
      "page": "MaizeSeneParms",
      "title": "Lists values for senecence parameters",
      "topics": [
        "MaizeSeneParms"
      ]
    },
    {
      "page": "MCMCBioGro",
      "title": "Simulated annealing and MCMC function",
      "topics": [
        "MCMCBioGro",
        "print.MCMCBioGro"
      ]
    },
    {
      "page": "MCMCc4photo",
      "title": "Markov chain Monte Carlo for C4 photosynthesis parameters",
      "topics": [
        "MCMCc4photo",
        "print.MCMCc4photo"
      ]
    },
    {
      "page": "MCMCEc4photo",
      "title": "Markov chain Monte Carlo for C4 photosynthesis parameters",
      "topics": [
        "MCMCEc4photo"
      ]
    },
    {
      "page": "mOpc3photo",
      "title": "Multiple optimization of assimilation (or stomatal conductance) curves.",
      "topics": [
        "mOpc3photo"
      ]
    },
    {
      "page": "mOpc4photo",
      "title": "Multiple optimization of C4 photosynthesis.",
      "topics": [
        "mOpc4photo",
        "plot.mOpc4photo",
        "print.mOpc4photo"
      ]
    },
    {
      "page": "obsBea",
      "title": "Miscanthus assimilation field data",
      "topics": [
        "obsBea"
      ]
    },
    {
      "page": "obsBeaC",
      "title": "Complete Miscanthus assimilation field data",
      "topics": [
        "obsBeaC"
      ]
    },
    {
      "page": "obsNaid",
      "title": "Miscanthus assimilation data",
      "topics": [
        "obsNaid"
      ]
    },
    {
      "page": "OpBioGro",
      "title": "Optimization of dry biomass partitioning coefficients.",
      "topics": [
        "constrOpBioGro",
        "OpBioGro",
        "summary.OpBioGro"
      ]
    },
    {
      "page": "Opc3photo",
      "title": "Optimize parameters of the C3 photosynthesis model.",
      "topics": [
        "Opc3photo",
        "plot.Opc3photo",
        "predict.Opc3photo",
        "print.Opc3photo"
      ]
    },
    {
      "page": "Opc4photo",
      "title": "Optimization of C4 photosynthesis parameters",
      "topics": [
        "Opc4photo",
        "plot.Opc4photo",
        "plotAQ",
        "predict.Opc4photo",
        "print.Opc4photo",
        "print.summary.Opc4photo",
        "summary.Opc4photo"
      ]
    },
    {
      "page": "plot.BioGro",
      "title": "Plotting function for BioGro objects",
      "topics": [
        "plot.BioGro"
      ]
    },
    {
      "page": "plot.MCMCc4photo",
      "title": "Plotting function for MCMCc4photo objects",
      "topics": [
        "plot.MCMCc4photo"
      ]
    },
    {
      "page": "plot.MCMCEc4photo",
      "title": "Plottin function for MCMCEc4photo objects",
      "topics": [
        "plot.MCMCEc4photo"
      ]
    },
    {
      "page": "plot.mOpc3photo",
      "title": "Plotting method",
      "topics": [
        "plot.mOpc3photo"
      ]
    },
    {
      "page": "plot.mOpc4photo",
      "title": "Plotting method",
      "topics": [
        "plot.mOpc4photo"
      ]
    },
    {
      "page": "plot.willowGro",
      "title": "Plotting function for willowGro objects",
      "topics": [
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    },
    {
      "page": "plotAC",
      "title": "plot A/Ci curve",
      "topics": [
        "plotAC"
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    },
    {
      "page": "plotAQ",
      "title": "plot A/Q curve",
      "topics": [
        "plotAQ"
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    },
    {
      "page": "predict.Opc3photo",
      "title": "Predict method",
      "topics": [
        "predict.Opc3photo"
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    },
    {
      "page": "predict.Opc4photo",
      "title": "Predict method",
      "topics": [
        "predict.Opc4photo"
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    },
    {
      "page": "print.MCMCEc4photo",
      "title": "Print an MCMCEc4photo object",
      "topics": [
        "print.MCMCEc4photo"
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    },
    {
      "page": "print.mOpc4photo",
      "title": "Printing method",
      "topics": [
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    },
    {
      "page": "print.Opc3photo",
      "title": "Display methods for Opc4photo and OpEC4photo",
      "topics": [
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    },
    {
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      "title": "Display methods for Opc4photo and OpEC4photo",
      "topics": [
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    },
    {
      "page": "Rmiscanmod",
      "title": "RUE-based model to calculate miscanthus growth and yield.",
      "topics": [
        "Rmiscanmod"
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    },
    {
      "page": "RsqC4photo",
      "title": "R-squared for C4 photosynthesis simulation (Collatz model)",
      "topics": [
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    },
    {
      "page": "RssBioGro",
      "title": "Residual sum of squares for BioGro.",
      "topics": [
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    },
    {
      "page": "RUEmodMY",
      "title": "Radiation use efficiency based model",
      "topics": [
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    },
    {
      "page": "simDat2",
      "title": "Simulated biomass data.",
      "topics": [
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    },
    {
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      "title": "Soil Evaporation",
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    {
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      "title": "soil multi-layered",
      "topics": [
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      "title": "This function will implement simple calculations of predicted and residuals for the Opc4photo function",
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      "title": "Sunlit shaded multi-layer model",
      "topics": [
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    {
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      "title": "Returns a value for SlopeFS from a function of temperature",
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    {
      "page": "valid_dbp",
      "title": "Validate dry biomass partitioning coefficients",
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    {
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        "weather05"
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      "title": "willowmass crops growth simulation",
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        "centuryParms",
        "nitroParms",
        "phenoParms",
        "photoParms",
        "print.willowGro",
        "seneParms",
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        "soilParms",
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    {
      "page": "wtrstr",
      "title": "Simple function to illustrate soil water content effect on plant water stress.",
      "topics": [
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