Changes in version 1.10.0.9000                     

Changed

  - Sensitivity analysis and ensemble runs now generate separate input
    design matrices with appropriate dimensions, fixing dimension
    mismatch errors in multisite workflows. (#3708)
  - Generated runs are now stored in a runs_manifest.csv file in the
    output directory instead of modifying samples.Rdata (#3708)
  - Removed tests/Rcheck_reference.log, which was used to ignore
    historic check messages that have now been fixed.

                       Changes in version 1.10.0                        

Changed

Breaking: Ensemble runs now use shared input samples across all sites
instead of independent sampling per site.

  - run.write.configs() now has two new required args ensemble.size and
    input_design, and removes ens.sample.method (#3535, #3612).
  - runModule.run.write.configs() has new arg input_design, with default
    NULL meaning to generate one internally (#3535).
  - Removed unused functions create_execute_test_xml() and
    model_specific_tags(), which depended on deprecated database and web
    frontend (@S1DDHEY, #3826).

                        Changes in version 1.9.0                        

  - PEcAn.workflow is now distributed under the BSD 3-clause license
    instead of the NCSA Open Source license.
  - It is now easier to run a workflow without a connection to the PEcAn
    database by setting settings$database$bety$write to FALSE (or
    undefining it entirely), at the obvious cost that runs set up this
    way are not recorded in the database (@yinghaoSunn, #3398).
  - Improved handling of modellauncher in start_model_runs(), including
    some support for array runs via settings like
    <qsub.extra>-t 1-@NJOBS@</qsub.extra>.

                        Changes in version 1.8.0                        

  - New functions start_model_runs and runModule_start_model_runs, both
    moved from package PEcAn.remote (where they were start.model.runs
    and runModule.start.model.runs). They kick off the model runs you
    set up earlier in the workflow and handle the details of local or
    remote execution.

                        Changes in version 1.7.1                        

  - All changes in 1.7.1 and earlier were recorded in a single file for
    all of the PEcAn packages; please see
    https://github.com/PecanProject/pecan/blob/v1.7.1/CHANGELOG.md for
    details.