Package 'PEcAn.RothC'

Extract monthly weather from CF file for input to RothC

Description

Input files need to be named '<in.path>/<in.prefix>.YYYY.nc'

Usage

met2model.RothC(
  in.path,
  in.prefix,
  outfolder,
  start_date,
  end_date,
  overwrite = FALSE
)

Arguments

in.path	path on disk where CF files live
in.prefix	prefix for each file
outfolder	location where model specific output is written.
start_date, end_date	When to start and end output. Specify as exact dates, but output will be padded to whole months.
overwrite	logical: replace output files if they already exist?

Details

Output files are named '<outfolder>/<in.prefix>.YY-mm.YY-mm.dat' with one line per month and columns for temperature, rainfall, and evaporation.

Note that the created file contains only weather data and not any of the soil or management data needed for RothC's single combined input file. See 'write.config.RothC()' for assembly into a model-ready RothC_input.dat'.

Value

data frame summarizing file metadata

Author(s)

Chris Black

---

Convert RothC output to PEcAn-formatted netCDF

Description

Convert RothC output to PEcAn-formatted netCDF

Usage

model2netcdf.RothC(outdir, sitelat, sitelon, start_date, end_date)

Arguments

outdir	Location of model output
sitelat	Latitude of the site
sitelon	Longitude of the site
start_date	Start time of the simulation
end_date	End time of the simulation

Author(s)

Chris Black

---

Read restart template for SDA

Description

Reads restart files from RothC. Not implemented yet.

Usage

read_restart.RothC(outdir, runid, stop.time, settings, var.names, params)

Arguments

outdir	Output directory
runid	Run ID
stop.time	Year that is being read
settings	PEcAn settings object
var.names	Variable names to be extracted
params	Any parameters required for state calculations

Value

Forecast numeric matrix

Author(s)

Chris Black

---

Write restart template for SDA

Description

Not implemented yet.

Usage

write_restart.RothC(
  outdir,
  runid,
  start.time,
  stop.time,
  settings,
  new.state,
  RENAME,
  new.params,
  inputs
)

Arguments

outdir	outout directory
runid	run id
start.time	Time of current assimilation step
stop.time	Time of next assimilation step
settings	pecan settings list
new.state	Analysis state matrix returned by sda.enkf
RENAME	flag to either rename output file or not
new.params	optional, additionals params to pass write.configs that are deterministically related to the parameters updated by the analysis
inputs	new input paths updated by the SDA workflow, will be passed to write.configs

Author(s)

Chris Black

---

Writes a RothC config file.

Description

Requires a pft xml object, a list of trait values for a single model run, and the name of the file to create

Usage

write.config.RothC(defaults, trait.values, settings, run.id)

Arguments

defaults	list of defaults to process
trait.values	vector of samples for a given trait
settings	list of settings from pecan settings file
run.id	id of run

Value

configuration file for MODEL for given run

Author(s)

Chris Black

---