Package 'PEcAn.PRELES'

Title: PEcAn Package for Integration of the PRELES Model
Description: This module provides functions to run the PREdict Light use efficiency Evapotranspiration and Soil moisture (PRELES) model on the PEcAn project. The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool designed to simplify the management of model parameterization,execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.
Authors: Mike Dietze [aut], Tony Gardella [aut, cre], University of Illinois, NCSA [cph]
Maintainer: Tony Gardella <[email protected]>
License: BSD_3_clause + file LICENSE
Version: 1.7.3.9000
Built: 2025-03-11 02:38:28 UTC
Source: https://github.com/PecanProject/pecan

Help Index

Process ncdf file, run PRELES model, and convert output .nc file in CF standard

Description

Process ncdf file, run PRELES model, and convert output .nc file in CF standard

Usage

runPRELES.jobsh(
  met.file,
  outdir,
  parameters,
  sitelat,
  sitelon,
  start.date,
  end.date
)

Arguments

met.file

base name for yearly nc files containing met data. Example: 'met.file="somefile"' matches somefile.2004.nc, somefile.2005.nc, etc.
outdir

Location of PRELES model output
parameters

An R data file containing parameter values. Must be an Rda file written via 'save()', and must define an object named 'trait.values'
sitelat, sitelon

Latitude and longitude of site in decimal degrees
start.date, end.date

Start and end time of the simulation

Author(s)

Tony Gardella, Michael Dietze

Write PRELES configuration files

Description

Writes a PRELES config file.

Usage

write.config.PRELES(defaults, trait.values, settings, run.id)

Arguments

defaults

list of defaults to process
trait.values

vector of samples for a given trait
settings

list of settings from pecan settings file
run.id

id of run

Value

configuration file for PRELES for given run

Author(s)

Tony Gardella, Micheal Dietze