Package 'PEcAn.ModelName'

Write MODEL met files

Description

Converts a met CF file to a model specific met file. The input files are calld <in.path>/<in.prefix>.YYYY.cf

Usage

met2model.MODEL(in.path, in.prefix, outfolder, overwrite = FALSE)

Arguments

in.path	path on disk where CF file lives
in.prefix	prefix for each file
outfolder	location where model specific output is written.
overwrite	logical: replace output files if they already exist?

Value

OK if everything was succesful.

Author(s)

Rob Kooper

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Code to convert MODELS's output into netCDF format

Description

Convert MODEL output into the NACP Intercomparison format (ALMA using netCDF)

Usage

model2netcdf.MODEL(outdir, sitelat, sitelon, start_date, end_date)

Arguments

outdir	Location of model output
sitelat	Latitude of the site
sitelon	Longitude of the site
start_date	Start time of the simulation
end_date	End time of the simulation

Author(s)

Rob Kooper

---

Read restart template for SDA

Description

Read restart files from model.

Usage

read_restart.ModelName(outdir, runid, stop.time, settings, var.names, params)

Arguments

outdir	Output directory
runid	Run ID
stop.time	Year that is being read
settings	PEcAn settings object
var.names	Variable names to be extracted
params	Any parameters required for state calculations

Value

Forecast numeric matrix

Author(s)

Alexey Shiklomanov

---

Write restart template for SDA

Description

Write restart files for model

Usage

write_restart.ModelName(
  outdir,
  runid,
  start.time,
  stop.time,
  settings,
  new.state,
  RENAME,
  new.params,
  inputs
)

Arguments

outdir	outout directory
runid	run id
start.time	Time of current assimilation step
stop.time	Time of next assimilation step
settings	pecan settings list
new.state	Analysis state matrix returned by sda.enkf
RENAME	flag to either rename output file or not
new.params	optional, additionals params to pass write.configs that are deterministically related to the parameters updated by the analysis
inputs	new input paths updated by the SDA workflow, will be passed to write.configs

Author(s)

Alexey Shiklomanov

---

Write MODEL configuration files

Description

Writes a MODEL config file.

Usage

write.config.MODEL(defaults, trait.values, settings, run.id)

Arguments

defaults	list of defaults to process
trait.values	vector of samples for a given trait
settings	list of settings from pecan settings file
run.id	id of run

Details

Requires a pft xml object, a list of trait values for a single model run, and the name of the file to create

Value

configuration file for MODEL for given run

Author(s)

Rob Kooper

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