library(PEcAn.all)
logger.setQuitOnSevere(FALSE)
settings <- read.settings("models/biocro/inst/extdata/c4grass.xml")
# Query the trait database for data and priors
settings$pfts <- get.trait.data(pft = settings$pfts, modeltype = settings$model$type,
dbfiles = settings$run$dbfiles, database = settings$database$bety,
forceupdate = TRUE)
# Run the PEcAn meta.analysis
run.meta.analysis(pfts = settings$pfts, iterations = settings$meta.analysis$iter, threshold = settings$meta.analysis$threshold,
dbfiles = settings$run$dbfiles, database = settings$database$bety)
run.write.configs(settings = settings, write = FALSE) # Calls model specific write.configs e.g. write.config.ed.R
## load met data
PEcAn.workflow::start_model_runs(settings = settings, write = FALSE) # Start ecosystem model runs
get.results(settings) # Get results of model runs
run.sensitivity.analysis() # Run sensitivity analysis and variance decomposition on model output
run.ensemble.analysis() # Run ensemble analysis on model output.